Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq41 104 2e-16 seq20 91.5 1e-12 >seq41 Length=212842 Score = 104 bits (114), Expect = 2e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | |||||||| ||||| || || ||||| || ||||||||||| || || ||| Sbjct 140576 GCAGTCGTCACTGTACCCGCATACTTCAACGACTCCCAGCGTCAAGCTACCAAGGACGCT 140517 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | || ||||| || || || || || || ||||| || || ||||||||||| || Sbjct 140516 GGTCTCATCGCTGGGCTGAACGTCCTCCGCATCATCAACGAGCCGACTGCTGCTGCCATT 140457 Query 550520 GCATATGGACTTGATAA 550536 || || || ||||| || Sbjct 140456 GCCTACGGTCTTGACAA 140440 Score = 91.5 bits (100), Expect = 1e-12 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | ||||| || ||||| || || ||||| || |||||||| || || || ||| Sbjct 58562 GCAGTCGTCACTGTGCCCGCATACTTCAACGACTCCCAGCGTCAAGCCACCAAGGACGCT 58503 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | || |||||||| || || || || || ||||| || || ||||||||||| | Sbjct 58502 GGTCTCATCGCTGGACTGAACGTCCTCCGCATCATCAACGAGCCGACTGCTGCTGCCATC 58443 Query 550520 GCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 || || || || || || | | ||| || | || || |||||||| || Sbjct 58442 GCCTACGGTCTCGACAAGAAGACTGAGGGCGAGCGCAACGTGCTCATCTTCGA 58390 >seq20 Length=756513 Score = 91.5 bits (100), Expect = 1e-12 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| | ||||| || ||||| || || ||||| || |||||||| || || || ||| Sbjct 690935 GCAGTCGTCACTGTGCCCGCATACTTCAACGACTCCCAGCGTCAAGCCACCAAGGACGCT 690994 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 || | || |||||||| || || || || || ||||| || || ||||||||||| | Sbjct 690995 GGTCTCATCGCTGGACTGAACGTCCTCCGCATCATCAACGAGCCGACTGCTGCTGCCATC 691054 Query 550520 GCATATGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 || || || || || || | | ||| || | || || |||||||| || Sbjct 691055 GCCTACGGTCTCGACAAGAAGACTGAGGGCGAGCGCAACGTGCTCATCTTCGA 691107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029283730793680