Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1 210 4e-49 >seq1 Length=3303888 Score = 210 bits (232), Expect = 4e-49 Identities = 565/860 (66%), Gaps = 30/860 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 |||||| |||||||||||||||| | ||| |||||| || || |||||||||||| Sbjct 493990 ATATGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATTGATCTG 494049 Query 25537 GCCAAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 | || || || ||| |||| || || ||| ||| || || ||| || ||| Sbjct 494050 TCGAAAGATCTGCACGACTGGAACAAGCGTCT---CAATGATGACGAGCGATTCTTCATT 494106 Query 25594 T---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAG 25650 | | ||| | || ||||| || || || || || || || |||||||| ||| |||| Sbjct 494107 TCACATGTGCTTGCCTTCTTCGCCGCATCAGACGGCATCGTCAACGAGAACCTGGTCGAG 494166 Query 25651 AGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCC 25710 |||||| | || ||||| | ||||| || |||||||| |||||||| Sbjct 494167 CGATTCAGTGGCGAGGTGCAAATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATCATG 494226 Query 25711 ATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGA- 25766 || || ||| | ||||| ||| || | || || || || ||||| | || Sbjct 494227 ATGGAGAATATCCACTCCGAGACCTACTCA---CTACTCATCGACACCTACATCAGCGAA 494283 Query 25767 CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAA 25826 | ||||| | | || || ||| |||||||| |||| || ||||| | ||| Sbjct 494284 CCTCGCCAACGCACATAC-CTCTTTAACGCCATCGACAACATCCCGTGCATCCGCAAGAA 494342 Query 25827 GGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGT 25886 ||| ||||| | |||||||||| | | | | || || ||| || || | Sbjct 494343 GGCCAACTGGGCACTAAAGTGGATCAGCGACGACGCATCGACCTTCGGCTGCCGTCTCAT 494402 Query 25887 AGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCT 25946 |||||||| ||||| |||||||| || ||| |||||||| || || ||||||||||| Sbjct 494403 TGCCTTTGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCT 494462 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 |||| || ||| |||||||| || ||| |||||||||||||| | | ||||| Sbjct 494463 CAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGA 494522 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC---ACAAACC 26063 ||| | |||| || || ||||| || || |||| ||| | |||| |||| || Sbjct 494523 GGGCATGCACACCGACTTCGCCTGTATG--CTGCACG---CACAT-CTCCGCAACAAGCC 494576 Query 26064 TTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCN 26123 || | || ||| || ||||||| || ||||| ||||||||| | ||||| | Sbjct 494577 ATCACTCGACCTTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCT 494636 Query 26124 NNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACAT 26183 | ||||||||| || |||||| |||| ||||| Sbjct 494637 CTCAGACGCCCTACCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGTACAT 494696 Query 26184 TGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGC- 26242 |||| || || |||| || || | || || | || || ||||| |||| Sbjct 494697 CGAGTTCGTCGCTGACCGCCTACTCCTCGCACTCGGCCACGGCAAGTACTACA--ACGCC 494754 Query 26243 -CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAA 26301 | ||||| |||||||| ||||| ||||| || | | || ||||| |||||||| || Sbjct 494755 ACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAG 494814 Query 26302 AAGAGGGTCGGCGACTATCA 26321 ||| | || || ||||| || Sbjct 494815 AAGCGCGTAGGTGACTACCA 494834 Score = 178 bits (196), Expect = 2e-39 Identities = 571/876 (65%), Gaps = 33/876 (4%) Strand=Plus/Plus Query 25463 TAACACACAA-AGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCC 25521 |||||| || | | |||||| |||||||||||||||| | ||| |||||| || Sbjct 528342 TAACACCCATCACAGATATGGCAGATGTACAAGAAGGCAGAGGCATCATTCTGGACAGCA 528401 Query 25522 GAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAG 25578 || ||||| || ||| | ||||| || ||| |||| || || ||| | | |||||| Sbjct 528402 GAGGAGATCGACCTGTCGAAGGATCTGCACGACTGGAACAAGCGTCTCAACGATGACGAG 528461 Query 25579 CAGCATTTTCTCAAGT---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAAC 25635 | ||| | ||| | | ||| | || ||||| || || || || || || || ||| Sbjct 528462 CG--ATTCT-TCATTTCACATGTGCTTGCCTTCTTCGCCGCATCAGACGGCATTGTCAAC 528518 Query 25636 GAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTA 25694 ||||| ||| |||| | |||| | || || || ||| | | || || ||||| Sbjct 528519 GAGAACCTGGTCGAGCGCTTCAGTGGTGAGGTCCAAATACCCG-ACGCTCGCTGCTTCTA 528577 Query 25695 CGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG-- 25752 ||| |||||||| || || || | ||||| ||| || | || || || Sbjct 528578 CGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCA---CTACTCATCGA 528634 Query 25753 -ACGTACATTACAGA-CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATAC 25810 || ||||| | || | ||||| | | || || || |||||||| |||| | Sbjct 528635 CACCTACATCAGTGAACCTCGCCAACGCACATAC-CTCTTCAACGCCATCGACAACATCC 528693 Query 25811 CCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGT 25870 || ||||| | |||||| ||||| | |||||||||| | | | | || | Sbjct 528694 CCTGCATCCGCAAGAAGGCCAATTGGGCACTCAAGTGGATCAGCGACGATGCATCGACCT 528753 Query 25871 TTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTG 25930 | ||| || || | || || || ||||| ||||| ||||| ||| || || || | Sbjct 528754 TCGGCTGCCGTCTCATCGCTTTCGCAGCTGTCGAGGGTATCTTCTTCTCTGGCTCATTCG 528813 Query 25931 CGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGC 25990 | |||||||||||||| ||| || ||| ||||||||| || ||| |||||||||| Sbjct 528814 CCGCCATCTTCTGGCTGAAGAAGCGCGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGC 528873 Query 25991 TCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACT 26050 ||||| | | |||||||| | |||| || || |||||| || || |||| ||| Sbjct 528874 TCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCATG--CTGCACG---CACA 528928 Query 26051 TGCTCC---ACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107 | |||| |||| || || | || |||| || ||||||| || ||||| |||| Sbjct 528929 T-CTCCGCAACAAGCCATCACTCGACCTCGTCCACCAGATCATCACGGAAGCTGTCGAGA 528987 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 | ||| | ||||| | | ||||||||| || | Sbjct 528988 TTGAGCAAGAGTTCCTCTCGGACGCCCTGCCCTGCGCACTTCTCGGCATGAACGCCAAGC 529047 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227 ||||| |||| ||||| |||| ||| || || | || || | || || | | || Sbjct 529048 TCATGTGCCAGTACATCGAGTTTGTCGCTGATCGCCTACTCCTCGCACTTGGCCACAGCA 529107 Query 26228 GACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 ||||| |||| | ||||| |||||||| ||||| ||||| || | | || || Sbjct 529108 AGTACTACA--ACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAA 529165 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||| |||||||| || ||| | || || ||||| || Sbjct 529166 GACGAACTTCTTCGAGAAGCGCGTAGGTGACTACCA 529201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842106350080