Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq14 86.0 2e-11 seq111 84.2 6e-11 seq13 84.2 6e-11 seq9 84.2 6e-11 >seq14 Length=1149390 Score = 86.0 bits (94), Expect = 2e-11 Identities = 197/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || |||||||| || ||||| | || || || || ||||| || ||||| ||||| Sbjct 938249 CGGCGCTGAATGTACCCAGTCTCGGCGGTCTTGACCGCAGTATCGATCAGACCTTCACGA 938308 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710 |||||||| || |||||||| | ||| ||| || |||| | ||| ||||| ||| Sbjct 938309 CCACCCATGGCGTGGAAGAAGAACTCGGTGGGT-GTCAAGCCACGCAA-GTAGGAGTTCT 938366 Query 302711 CAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT 302770 | ||||| || || | | ||||| | ||| ||| | ||||| || || || | || Sbjct 938367 CGACGAAGCCGCGAGATGCAGGCGAGTAATCGTCCTTTGGGAAGTGAGGAAGCGTGCGGT 938426 Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCAT-CAACGTTCTGCTGTCCCA-GGCACGAAAT 302828 || ||||| |||| | ||||| || | || || | || || || | |||| | | Sbjct 938427 ACTTGAAGCCGAATGGCAATCGCTTGCCCTCCAGCGAT-TGTTGACCGACGGCA-GCTGT 938484 Query 302829 CATCTGCGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 |||||| || || || | | | ||||||||||| | || ||||| Sbjct 938485 CATCTGTGAGATGTTCACAGAAGAACCCTTGGAGCCGGACTTGACCAT 938532 >seq111 Length=9111 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 ||||| | || || ||||| |||||||||||||| || ||||||||||||| || | Sbjct 2822 GCGAGGCCTCCGAGGGAGTCGCGGTCGAGGAAATTGGTGGGTTCGTCAAGGACGAGGAGA 2881 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 ||||| | ||||||| || | |||| || ||||| || ||||| || ||||| || Sbjct 2882 TGCGGGTTATTCCACATGGCGCCCGCCAACACAACCTTGACTTTCTGGCCTCCTGACAG 2940 >seq13 Length=1224135 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 ||||| | || || ||||| |||||||||||||| || ||||||||||||| || | Sbjct 1170349 GCGAGGCCTCCGAGGGAGTCGCGGTCGAGGAAATTGGTGGGTTCGTCAAGGACGAGGAGA 1170290 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 ||||| | ||||||| || | |||| || ||||| || ||||| || ||||| || Sbjct 1170289 TGCGGGTTATTCCACATGGCGCCCGCCAACACAACCTTGACTTTCTGGCCTCCTGACAG 1170231 >seq9 Length=1716618 Score = 84.2 bits (92), Expect = 6e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 ||||| | || || ||||| |||||||||||||| || ||||||||||||| || | Sbjct 342747 GCGAGGCCTCCGAGGGAGTCGCGGTCGAGGAAATTGGTGGGTTCGTCAAGGACGAGGAGA 342806 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 ||||| | ||||||| || | |||| || ||||| || ||||| || ||||| || Sbjct 342807 TGCGGGTTATTCCACATGGCGCCCGCCAACACAACCTTGACTTTCTGGCCTCCTGACAG 342865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471813225022184