Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 158 1e-32 seq8 156 5e-32 seq19 93.3 5e-13 seq12 93.3 5e-13 seq9 89.7 6e-12 >seq1 Length=3303888 Score = 158 bits (174), Expect = 1e-32 Identities = 225/314 (72%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| |||||| ||||| |||||||| |||| ||||| Sbjct 494840 GCCTTCTGGTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATG 494781 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| || ||||| | | Sbjct 494780 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCCGTGGCCGAGTGCGAGG 494721 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| Sbjct 494720 AGTAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGA 494661 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | || | ||||||| |||||||||||| || || |||| Sbjct 494660 AGTGCGCAGGGTAGGGCGTCTGAGAGGAACTCTTGCTCGATCTCGACAGCTTCCGTGATG 494601 Query 868931 ATCTGCCTGGGC-ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 ||||| ||| | | |||| || ||||||||| ||| | || |||| ||||| Sbjct 494600 ATCTG-GTGGACAAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCATACAGGC 494542 Query 868990 AAAGTCGCAGTGCA 869003 |||||| ||||| Sbjct 494541 GAAGTCGGTGTGCA 494528 Score = 154 bits (170), Expect = 2e-31 Identities = 224/314 (71%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || |||||| |||||| ||||| |||||||| |||| ||||| Sbjct 529207 GCCTTCTGGTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATG 529148 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| | || || | | Sbjct 529147 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCTGTGGCCAAGTGCGAGG 529088 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || ||||| || ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 529087 AGTAGGCGATCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGA 529028 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | || | ||||||| ||| |||||||| || || |||| Sbjct 529027 AGTGCGCAGGGCAGGGCGTCCGAGAGGAACTCTTGCTCAATCTCGACAGCTTCCGTGATG 528968 Query 868931 ATCTGCCTGGGC-ACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGC 868989 ||||| ||| | | |||| || ||||||||| ||| | || |||| |||||| Sbjct 528967 ATCTG-GTGGACGAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCAGCATGCAGGC 528909 Query 868990 AAAGTCGCAGTGCA 869003 |||||| ||||| Sbjct 528908 GAAGTCGGTGTGCA 528895 Score = 150 bits (166), Expect = 2e-30 Identities = 196/265 (74%), Gaps = 7/265 (3%) Strand=Plus/Minus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| |||||||||||| || ||||||||||||||||| ||||| ||| | Sbjct 494504 TCGTTGGAGAAGGTGAGGCCGGGCATCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCG 494445 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 || || ||||| || ||||||||||| || |||||| | ||||| || | | ||| Sbjct 494444 AACGAACCAGAGAAGAAAATGCCCTCGACAGCTGCAAAGGCAATGAGACGGCAGCCGAAG 494385 Query 869321 GTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGAC 869380 ||||| | | || | | |||||||||| | ||||||| |||||| || | | || Sbjct 494384 --GTCGATG-CGTCGTCGCTGATCCACTTTAGTGCCCAGTTGGCCTTCTTGCGGATGCAC 494328 Query 869381 GGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGC-CGGGTCCTTGACATAGG 869438 || | ||||||||||| |||||||| || | || ||| || || ||| |||| Sbjct 494327 GGGATGTTGTCGATGGCGTTAAAGAGGTATGTGCGTT--GGCGAGGTTCGCTGATGTAGG 494270 Query 869439 TGTCGATCAGGAGCGAATAGGTCTC 869463 ||||||| || || || |||||||| Sbjct 494269 TGTCGATGAGTAGTGAGTAGGTCTC 494245 Score = 143 bits (158), Expect = 3e-28 Identities = 207/286 (72%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||| |||| ||||||||||||||| ||||||||| Sbjct 528892 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCCCGCGCTTC 528833 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||||||| ||| ||| ||||| ||||| |||||||| || || || Sbjct 528832 TTCAGCCAGAAGATGGCGGCGAATGAGCCAGAGAAGAAGATACCCTCGACAGCTGCGAAA 528773 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||||||| || | | ||| ||||| | | || | | |||||||||| | ||||| Sbjct 528772 GCGATGAGACGGCAGCCGAAG--GTCGATG-CATCGTCGCTGATCCACTTGAGTGCCCAA 528716 Query 869360 TCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTC 869418 | |||||| || | | | || | ||||||||||| ||||||| || | || Sbjct 528715 TTGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGTATGTGCGTT-- 528658 Query 869419 GGC-CGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 ||| || || ||| ||||||||||| || || || |||||||| Sbjct 528657 GGCGAGGTTCACTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTC 528612 >seq8 Length=1734925 Score = 156 bits (172), Expect = 5e-32 Identities = 146/183 (80%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177 ||||||| | |||||| || |||| ||| | ||||| ||| | | || ||| Sbjct 1459425 CGACATCGAGGAGTGGGATCAGAAGTTCATGC-AGGTCGATCAGGAGATGTTATTCGAGA 1459483 Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237 | |||||||| ||||||||| | ||||||||| ||||||||||| ||||||||||| | | Sbjct 1459484 TCATCCTCGCTGCCAACTACATGGACATCAAGGCTCTGCTCGATGTTGGGTGCAAGACCG 1459543 Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 | || ||||||||||||||||||||||| || |||||||||||||| || |||||| || Sbjct 1459544 TCGCAAACATGATCAAGGGCAAGTCGCCTGAAGAGATCCGCAAGACGTTCAACATCCAGA 1459603 Query 1592298 ACG 1592300 ||| Sbjct 1459604 ACG 1459606 Score = 152 bits (168), Expect = 6e-31 Identities = 145/183 (79%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 1592119 CGACATCTCGCCGTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGT 1592177 ||||||| | ||||||| || |||| ||| | ||||| ||| | | || ||| Sbjct 1455013 CGACATCGAGGAGTGGGACCAGAAGTTCATGCAA-GTCGACCAGGAGATGTTGTTCGAGA 1455071 Query 1592178 TGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTG 1592237 | |||||||| ||||||||| | ||||||||| | || |||||| ||||||||||| | | Sbjct 1455072 TCATCCTCGCTGCCAACTACATGGACATCAAGGCGCTTCTCGATGTTGGGTGCAAGACCG 1455131 Query 1592238 TGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGT 1592297 | || ||||||||||||||||||||||| || |||||||||||||| || |||||| || Sbjct 1455132 TCGCAAACATGATCAAGGGCAAGTCGCCTGAAGAGATCCGCAAGACGTTCAACATCCAGA 1455191 Query 1592298 ACG 1592300 ||| Sbjct 1455192 ACG 1455194 >seq19 Length=770886 Score = 93.3 bits (102), Expect = 5e-13 Identities = 324/503 (64%), Gaps = 16/503 (3%) Strand=Plus/Plus Query 1626982 TGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCG 1627041 || ||||| || |||||||||| | | ||||| | ||||||| || ||||||||||| Sbjct 62511 TGATCGACAGTGAACTGGATGGGCGCTGAGGCGGCCATGGTGCGGAGGTAGTACATGCCA 62570 Query 1627042 GTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGCG 1627101 ||||| || || | ||||| || | |||||| |||||||| || | | | || Sbjct 62571 GTCTTAAGTCCTAGACGCCAGCCGGTGAAGTGCATGGACGTGAT---CTTGCCCAT--CG 62625 Query 1627102 TCGGCGC-----AGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGG 1627156 ||||| | || | ||| ||||||||| ||| |||| ||| | ||||||| Sbjct 62626 TCGGCTCCTTCATGTGGATGTTTAGCGACTGGGACTGATCGATGAAGGCGCCACGATCGG 62685 Query 1627157 CCGCCATGTCGATGGTGACCCGGTTGGGCACCTCCCACACGGTCTTGAAGATGGCCTTGA 1627216 | | ||| | |||| || || | | | |||||| || ||||| | | |||||| Sbjct 62686 CTGACATCTGGATGATGTTGCGCTGGCTGATCTCCCAGACAGTCTTATACAGCTCCTTGA 62745 Query 1627217 GGTCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCC 1627276 || | ||| | | | || || ||| | ||||| | |||| || | Sbjct 62746 TCTC-GTCGG-----GGATATTGGGAATGCGCTGGATAGAGCCACCATCTGCGATGATGC 62799 Query 1627277 TGTCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGT 1627336 || | || | |||| ||||| | | ||| ||||| ||| | ||| Sbjct 62800 GGTTCTTCATGTTGTCGCTCCAGAGGCCCATGTCGACAAGGTCCTTGAGCAGCCAGGGGT 62859 Query 1627337 TGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCT 1627396 |||| || || ||||| | || || || || | |||||||||| ||||| || Sbjct 62860 TGACGACTTGGAACTCGCCGGCCAGGACACGACGAGAGTAGATGTTGCTGGTGTACGGCT 62919 Query 1627397 CGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGA 1627456 | | ||| || |||| ||||||||| || | || |||||||| |||| |||| Sbjct 62920 CAAAGCACTCATTGAACCCCATGATCTGCGATGTGCTTGCTGTGGGCATAGGCGCGACGA 62979 Query 1627457 GGAGCGAGTTGCGCAGGCCGTGC 1627479 | || |||||||| | ||| ||| Sbjct 62980 GCAGAGAGTTGCGGACGCCATGC 63002 >seq12 Length=1358697 Score = 93.3 bits (102), Expect = 5e-13 Identities = 307/468 (66%), Gaps = 12/468 (3%) Strand=Plus/Plus Query 1573775 CCTCCCGTGGATCGAAAAGTATCGCCCTATGGTGCTCGACGACATTGTCGGCAACGAGCA 1573834 |||||| ||| |||| ||||||||||| | | ||||| || || || |||||| | | Sbjct 598506 CCTCCCCTGGGTCGAGAAGTATCGCCCCGTCTTCCTCGATGATATAGTAGGCAAC-ACCG 598564 Query 1573835 CGCCG-TCGCCTATCTCAGAGCGC-TGGCTGCCGACGGCGACATGCCCAACCTCTTGCTG 1573892 | || ||| |||| || | | || || ||| |||||||| || || | | Sbjct 598565 AGACGATCGAGCGCCTCA-AGATCATCGCCAAAGATGGCAACATGCCCCACGTCATCATC 598623 Query 1573893 GCGGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGC---GCGTGTCCTC 1573949 ||| |||||||| ||||||||||| | |||||| || || | ||| Sbjct 598624 AGCGGTATGCCCGGCATTGGCAAGACCACCTCAGTTCTGTGTCTTGCTAGGCAATTGCTC 598683 Query 1573950 TTGGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTC 1574009 |||| || | | || || ||||| || || || || || ||||| || | Sbjct 598684 ---GGCGACGCATACAAGGAAGCTGTGCTGGAGCTGAATGCTAGCGATGAGCGAGGTATT 598740 Query 1574010 GACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGA 1574069 ||||| ||||| || ||||| | ||| |||| | || ||||| | ||| Sbjct 598741 GACGTGGTGCGGAATCGAATCAAAGGCTTCGCGCAGAAGAAGGTCACGTTGCCGGCTGGA 598800 Query 1574070 CGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCC 1574129 || || ||| || |||||||||| ||||| ||| || | || || | || |||||||| Sbjct 598801 CGGCAGAAGTTGGTCATCCTCGATGAGGCGGACAGCATGACATCCGGCGCTCAGCAGGCG 598860 Query 1574130 CTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAA-CAC 1574188 ||||| || ||||| | ||| | ||| |||||||| || | ||||| || || Sbjct 598861 CTGCGAAGGACTATGGAGATCTACAGCGGCACTACGCGCTTCGCATTCGCGTGTAATCAG 598920 Query 1574189 GTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCG 1574236 | | | | |||||| || | ||| |||||||||||| ||||| Sbjct 598921 AGCAACAAAA-TAATCGAGCCCTTGCAATCTCGCTGCGCCATCCTGCG 598967 >seq9 Length=1716618 Score = 89.7 bits (98), Expect = 6e-12 Identities = 175/255 (69%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 507599 GTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGAACCGGCAGCCGTCGCTGCAC 507658 |||||||| ||| | || |||||| | | | | ||||| ||||| ||||||||| Sbjct 1140944 GTCGAGCGACACATTGTCGATGGCGACTACATCATATTCAACCGCCAGCCTTCGCTGCAC 1141003 Query 507659 ATGGGCTCCATGCTCATGCACAAGGTGGTGCCCATGCCCGGGCGCACCATGCGATTCAAC 507718 | || |||||| | |||| ||| | ||||| ||| | || ||||| Sbjct 1141004 AAGGAGTCCATGATGGGTCACAGAGTGAGGGTGATGCCTTACTCGACCTTCCGCCTCAAC 1141063 Query 507719 CTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTG 507778 ||| ||||||| |||| ||||| ||||| || || |||||||||||| ||||||| Sbjct 1141064 CTGTCCGTCACCTCACCCTATAACGCAGACTTCGATGGTGACGAGATGAACTTGCACGTT 1141123 Query 507779 CCCCAGTC---CGAGACGGCGCGCGCCGAGGTGACGCACACCATGAGC-GTGTCGCTCAA 507834 || ||||| ||||| | ||| | ||||| | | | | || || ||| | ||||| Sbjct 1141124 CCGCAGTCACACGAGA---CACGCTCTGAGGTTATG-AATCTTTGTGCTGTGCCTCTCAA 1141179 Query 507835 GACCGTGTCGCCGCA 507849 | ||| |||||||| Sbjct 1141180 CATCGTCTCGCCGCA 1141194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107120160993544