Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 2e-12 >seq2 Length=2712501 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| | ||||| || || || || || || || || | ||||||| | || | Sbjct 1305186 AAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATCGACAAT 1305245 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||||||||| || || || ||||| || || || || |||||||| Sbjct 1305246 GTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTGATCTTC 1305305 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || ||||| |||||| | | | | || || || ||||| || ||||| || Sbjct 1305306 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCC 1305365 Query 24899 ACACTACA 24906 || || || Sbjct 1305366 ACCCTTCA 1305373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| | ||||| || || || || || || || || | ||||||| | || | Sbjct 1361313 AAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATCGACAAT 1361372 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||||||||| || || || ||||| || || || || |||||||| Sbjct 1361373 GTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTGATCTTC 1361432 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || ||||| |||||| | | | | || || || ||||| || ||||| || Sbjct 1361433 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCC 1361492 Query 24899 ACACTACA 24906 || || || Sbjct 1361493 ACCCTTCA 1361500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| | ||||| || || || || || || || || | ||||||| | || | Sbjct 1458838 AAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATCGACAAT 1458897 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||||||||| || || || ||||| || || || || |||||||| Sbjct 1458898 GTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTGATCTTC 1458957 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 ||||| || ||||| |||||| | | | | || || || ||||| || ||||| || Sbjct 1458958 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCC 1459017 Query 24899 ACACTACA 24906 || || || Sbjct 1459018 ACCCTTCA 1459025 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 1305399 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 1305458 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || ||| Sbjct 1305459 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAA 1305518 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || || ||||| || || || ||||| | | | || || || ||| Sbjct 1305519 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 1305578 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| | || | || | ||||| || Sbjct 1305579 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTTCGCCTCCGCGGTGG 1305625 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 1361526 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 1361585 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || ||| Sbjct 1361586 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAA 1361645 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || || ||||| || || || ||||| | | | || || || ||| Sbjct 1361646 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 1361705 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| | || | || | ||||| || Sbjct 1361706 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTTCGCCTCCGCGGTGG 1361752 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || | || Sbjct 1459051 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 1459110 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || ||| Sbjct 1459111 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAA 1459170 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | || || ||||| || || || ||||| | | | || || || ||| Sbjct 1459171 CAGCGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAAC 1459230 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || ||| | || | || | ||||| || Sbjct 1459231 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTTCGCCTCCGCGGTGG 1459277 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || || || || || | ||||||| | || | || || Sbjct 1333027 ACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATCGACAATGTCAAGAGC 1333086 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || ||||| || || || || |||||||| ||||| || Sbjct 1333087 AAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTGATCTTCGCCGGCAAG 1333146 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 ||||| |||||| | | | | || || || ||||| || ||||| || || || || Sbjct 1333147 CAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTTCA 1333205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896295296960