Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2 152 4e-32 >seq2 Length=2712501 Score = 152 bits (168), Expect = 4e-32 Identities = 229/324 (71%), Gaps = 6/324 (2%) Strand=Plus/Minus Query 34300 TTAGCGGACACGATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTG 34359 |||||| ||||||| ||||||| || || | || ||| ||| | ||| |||||| Sbjct 835997 TTAGCG---ACGATGA---CAGTCTCGGGATTCTTGCAGTCCTTACAGAGCACGAACTTG 835944 Query 34360 CGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATG 34419 ||| || || || || | ||||| | || || ||||| | |||||||| ||| Sbjct 835943 GCGATAAAGCCGTCCAGATGATCCTGCAGTTTGCTGGCTTCGTGAGCGCCGTTGATGATC 835884 Query 34420 AATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTT 34479 | || |||| ||| |||| | || |||||||| || ||| | ||||||||||| Sbjct 835883 CAGCGGTCGTCCTTGGGGTCGATGTTGGTCTGCGCGCCAAGTTCGAAGCCGAAGTACTTG 835824 Query 34480 GTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACA 34539 || ||| ||| ||| || ||||| | |||| | | || |||||||||||| Sbjct 835823 ATCACGTAGTTGGGCGGGCGCGCAAGCTGGTGCGCGACGTTGCTCAGGTTGACGATGACG 835764 Query 34540 GTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGG 34599 |||||||||||||| || || ||||| || |||| ||||||| ||| ||||||||| Sbjct 835763 GTCTTGATGCCGTTTCCTTTGCCTTCTACTTTGGACTGGATGCGCTCCATCTTGTAGCGG 835704 Query 34600 TAGAACGCGTCCGCCACATTGCGG 34623 ||||| | ||||| | || |||| Sbjct 835703 TAGAAGGGATCCGCGATATCGCGG 835680 Score = 147 bits (162), Expect = 2e-30 Identities = 222/315 (70%), Gaps = 3/315 (1%) Strand=Plus/Minus Query 34309 ACGATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAA 34368 ||||||| ||||||| || || | || ||| ||| | ||| ||||| ||| || Sbjct 933620 ACGATGA---CAGTCTCGGGATTCTTGCAGTCCTTACAGAGCACGAACTTAGCGATAAAG 933564 Query 34369 CCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCG 34428 ||||| || ||||||| | || || ||||| | |||||||| ||| | || ||| Sbjct 933563 CCATCCAGATGGTCCTGCAGTTTGCTGGCTTCGTGAGCGCCGTTGATGATCCAGCGGTCG 933504 Query 34429 TTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAA 34488 | ||| |||| | || |||||||| || ||| | ||||||||||| || ||| Sbjct 933503 TCCTTGGGGTCGATGTTGGTCTGCGCGCCAAGTTCGAAGCCGAAGTACTTGATCACGTAG 933444 Query 34489 ATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATG 34548 ||| ||| || ||||| | |||| | | | |||||||||||| ||||||||| Sbjct 933443 TTGGGCGGGCGCGCAAGCTGGTGCGCGACATTGCTTAGGTTGACGATGACGGTCTTGATG 933384 Query 34549 CCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCG 34608 ||||| || || ||||| || |||| ||||||| ||| ||||| |||||||| | Sbjct 933383 CCGTTTCCTTTACCTTCTACTTTGGACTGGATGCGCTCCATCTTGTACCGGTAGAAGGGA 933324 Query 34609 TCCGCCACATTGCGG 34623 ||||| | || |||| Sbjct 933323 TCCGCGATATCGCGG 933309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412840432690376