Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1 181 2e-39 seq8 136 6e-26 seq21 102 1e-15 seq9 89.7 8e-12 >seq1 Length=3303888 Score = 181 bits (200), Expect = 2e-39 Identities = 241/329 (73%), Gaps = 7/329 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || ||||| || ||| | |||||| ||| ||||||||||||||| ||||||||| Sbjct 528892 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCCCGCGCTTC 528833 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| |||||||| ||| ||| ||||| ||||| |||||||| || || || Sbjct 528832 TTCAGCCAGAAGATGGCGGCGAATGAGCCAGAGAAGAAGATACCCTCGACAGCTGCGAAA 528773 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 ||| ||| || | || ||| ||| | | | || | | |||||||||| | ||||| Sbjct 528772 GCGATGAGACG-GCAGCCGAAG-GTCGATG-CATCGTCGCTGATCCACTTGAGTGCCCAA 528716 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGG--TGGTCCTTCT 794578 | ||||| || | | |||| | ||||||||||| |||||| || | || Sbjct 528715 TTGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGTATGTGCGTTGG 528656 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 ||| || || ||| ||||||||||||||| || ||||||||||| ||||||||||| | Sbjct 528655 CGA--GGTTCACTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTCGGAGTGGATGTTCT 528598 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAG 794667 | || |||||||||||| || |||||| Sbjct 528597 CCATCATGATCTGGAAGCCGTAGAAGCAG 528569 Score = 170 bits (188), Expect = 3e-36 Identities = 226/308 (73%), Gaps = 7/308 (2%) Strand=Plus/Minus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 |||||| ||| |||||||||||| || ||||||||||||||||| ||||| || | Sbjct 494504 TCGTTGGAGAAGGTGAGGCCGGGCATCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCG 494445 Query 794422 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAA 794481 || || ||||| || ||||||||||| || |||||| | | ||| || | || || Sbjct 494444 AACGAACCAGAGAAGAAAATGCCCTCGACAGCTGCAAAGGCAATGAGACG-GCAGCCGAA 494386 Query 794482 GTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAG 794541 | ||| | | | || | | |||||||||| | ||||| | ||||| || | | | Sbjct 494385 G-GTCGATG-CGTCGTCGCTGATCCACTTTAGTGCCCAGTTGGCCTTCTTGCGGATGCAC 494328 Query 794542 GGCACCGTGTCGATGGCGCGAAAGAGG--TGGTCCTTCTCGACCGGGTCCTTGACGTAGG 794599 || | ||||||||||| ||||||| || | || ||| || || ||| ||||| Sbjct 494327 GGGATGTTGTCGATGGCGTTAAAGAGGTATGTGCGTTGGCGA--GGTTCGCTGATGTAGG 494270 Query 794600 TGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCAT 794659 |||||||||| || ||||||||||| |||||||| || || || |||||||||||| | Sbjct 494269 TGTCGATGAGTAGTGAGTAGGTCTCGGAGTGGATATTCTCCATCATGATCTGGAAGCCGT 494210 Query 794660 AAAAGCAG 794667 | |||||| Sbjct 494209 AGAAGCAG 494202 Score = 149 bits (164), Expect = 1e-29 Identities = 226/317 (71%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || |||||| |||||| ||||| |||||||| ||| Sbjct 494848 TGACACCAGCCTTCTGGTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGA 494789 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | ||||| ||| || |||| Sbjct 494788 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCCGTGGCCGA 494729 Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | ||| | || |||||||| |||||||| || ||||||||||||||||| |||||| Sbjct 494728 GTGCGAGG--AGTAGGCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTT 494671 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||||| || || ||| || | || || ||||||| |||||||||||| || Sbjct 494670 CATGCCGAGAAGTGCGCAGGGTAGGGCGTCTGAGAGGAACTCTTGCTCGATCTCGACAGC 494611 Query 794129 CTCGATGATGATCTGCCTGGGC-ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGA 794187 || |||||||||| ||| | | |||| || ||||||| | ||| | || | Sbjct 494610 TTCCGTGATGATCTG-GTGGACAAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCA 494552 Query 794188 GCAGGCAGGCAAAGTCG 794204 ||| ||||| |||||| Sbjct 494551 GCATACAGGCGAAGTCG 494535 Score = 136 bits (150), Expect = 6e-26 Identities = 223/317 (70%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || || || |||||| |||||| ||||| |||||||| ||| Sbjct 529215 TGACACCGGCCTTCTGGTAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGA 529156 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | ||| ||||||| | ||||| ||| | || | Sbjct 529155 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCTGTGGCCAA 529096 Query 794011 G--CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 | ||| | || ||||| || ||||| || || ||||||||||||||||| |||||| Sbjct 529095 GTGCGAGG--AGTAGGCGATCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTT 529038 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||||| || || |||||| | || || ||||||| ||| |||||||| || Sbjct 529037 CATGCCGAGAAGTGCGCAGGGCAGGGCGTCCGAGAGGAACTCTTGCTCAATCTCGACAGC 528978 Query 794129 CTCGATGATGATCTGCCTGGGC-ACGTCGGACGACGGCTTGTCGACGAGCATCGTGTAGA 794187 || |||||||||| ||| | | |||| || ||||||| | ||| | || | Sbjct 528977 TTCCGTGATGATCTG-GTGGACGAGGTCGAGTGATGGCTTGTTGCGGAGATGTGCGTGCA 528919 Query 794188 GCAGGCAGGCAAAGTCG 794204 ||| |||||| |||||| Sbjct 528918 GCATGCAGGCGAAGTCG 528902 >seq8 Length=1734925 Score = 136 bits (150), Expect = 6e-26 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 2035632 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGC 2035691 || ||| | |||||||| ||||||||| | ||||||||| | || |||||| | |||||| Sbjct 1455065 TTCGAGATCATCCTCGCTGCCAACTACATGGACATCAAGGCGCTTCTCGATGTTGGGTGC 1455124 Query 2035692 AAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAAC 2035751 |||||||| || ||| | ||||||||||||||||| || || ||||||||||| || ||| Sbjct 1455125 AAGACCGTCGCAAACATGATCAAGGGCAAGTCGCCTGAAGAGATCCGCAAGACGTTCAAC 1455184 Query 2035752 ATCAAGTACG 2035761 ||| || ||| Sbjct 1455185 ATCCAGAACG 1455194 Score = 136 bits (150), Expect = 6e-26 Identities = 108/130 (83%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 2035632 TTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGC 2035691 || ||| | |||||||| ||||||||| | ||||||||| | || |||||| | |||||| Sbjct 1459477 TTCGAGATCATCCTCGCTGCCAACTACATGGACATCAAGGCTCTGCTCGATGTTGGGTGC 1459536 Query 2035692 AAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAAC 2035751 |||||||| || ||| | ||||||||||||||||| || || ||||||||||| || ||| Sbjct 1459537 AAGACCGTCGCAAACATGATCAAGGGCAAGTCGCCTGAAGAGATCCGCAAGACGTTCAAC 1459596 Query 2035752 ATCAAGTACG 2035761 ||| || ||| Sbjct 1459597 ATCCAGAACG 1459606 >seq21 Length=734177 Score = 102 bits (112), Expect = 1e-15 Identities = 122/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| || ||||||||| |||| || || ||| | | Sbjct 488220 GTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCGAGCTCACCGGGAAG 488279 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| |||||||||| |||||||| ||||| | | ||| ||| |||||| || | Sbjct 488280 GATGAGGCGCACGGAAGTCTGGATTTCGCGCGAGGAGATGGTGGACTTCTTGTT-GTAGG 488338 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 | || || | |||||| || ||| ||| |||| ||||| Sbjct 488339 CGGCGAGCTTGGAGGCCTCTGTTGCGACGCGCTCGAAGATGTC 488381 Score = 102 bits (112), Expect = 1e-15 Identities = 122/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| || ||||||||| |||| || || ||| | | Sbjct 511289 GTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCGAGCTCACCGGGGAG 511348 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| |||||||||| |||||||| ||||| | | ||| ||| |||||| || | Sbjct 511349 GATGAGGCGCACGGAAGTCTGGATTTCGCGCGAGGAGATGGTGGACTTCTTGTT-GTAGG 511407 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 | || || | |||||| || ||| ||| |||| ||||| Sbjct 511408 CGGCGAGCTTGGAGGCCTCTGTTGCGACGCGCTCGAAGATGTC 511450 >seq9 Length=1716618 Score = 89.7 bits (98), Expect = 8e-12 Identities = 141/198 (71%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 429520 GGTG-GACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCG 429578 |||| || ||||||||| ||| | | |||||| | | | | ||||| ||||| Sbjct 1140935 GGTGCGATCGTCGAGCGACACATTGTCGATGGCGACTACATCATATTCAACCGCCAGCCT 1140994 Query 429579 TCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCGG-TCGCACCTT 429637 ||||| |||| || ||| ||| | |||| ||| | ||||| ||| ||||| Sbjct 1140995 TCGCTGCACAAGGAGTCCATGATGGGTCACAGAGTGAGGGTGATGCCTTACTCG-ACCTT 1141053 Query 429638 CCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAA 429697 ||| ||||||||| |||| || |||| ||||| ||||| || || ||||||||||| Sbjct 1141054 CCGCCTCAACCTGTCCGTCACCTCACCCTATAACGCAGACTTCGATGGTGACGAGATGAA 1141113 Query 429698 CCTGCACGTGCCCCAGTC 429715 | ||||||| || ||||| Sbjct 1141114 CTTGCACGTTCCGCAGTC 1141131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916221721101848