Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq2 125 5e-24 seq29 100 2e-16 seq23 89.7 3e-13 >seq2 Length=2712501 Score = 125 bits (138), Expect = 5e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| ||||| || || |||| | || Sbjct 1333442 AGGACGAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1333383 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| |||||||| || || || ||||||||| | || | ||||||||||| Sbjct 1333382 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 1333323 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || ||| || || | ||| |||||| Sbjct 1333322 TGGATCTTCGACTTGACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 1333263 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 1333262 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1333231 Score = 122 bits (134), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1333214 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1333155 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 1333154 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1333095 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || |||| ||| || Sbjct 1333094 TGGATCTTGCTCTTGAC--AT--TGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGAT 1333039 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 |||||| || || | ||||||||| ||| Sbjct 1333038 GGTCTTGCCGGTCAAGGTCTTTACGAAG 1333011 Score = 113 bits (124), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1305382 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1305323 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 1305322 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1305263 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || |||| ||| || Sbjct 1305262 TGGATCTTGCTCTTGAC--AT--TGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGAT 1305207 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 |||||| || || | ||| || || ||| Sbjct 1305206 GGTCTTGCCGGTCAAGGTTTTGACGAAG 1305179 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| ||||| || || |||| | || Sbjct 1305610 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1305551 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| |||||||| || || || || |||||| | || | ||||||||||| Sbjct 1305550 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 1305491 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || || | ||| || Sbjct 1305490 TGGATCTTCGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 1305435 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| || ||||||||||| Sbjct 1305434 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1305399 Score = 113 bits (124), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1361509 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1361450 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 1361449 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1361390 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || |||| ||| || Sbjct 1361389 TGGATCTTGCTCTTGAC--AT--TGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGAT 1361334 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 |||||| || || | ||| || || ||| Sbjct 1361333 GGTCTTGCCGGTCAAGGTTTTGACGAAG 1361306 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| ||||| || || |||| | || Sbjct 1361737 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1361678 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| |||||||| || || || || |||||| | || | ||||||||||| Sbjct 1361677 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 1361618 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || || | ||| || Sbjct 1361617 TGGATCTTCGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 1361562 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| || ||||||||||| Sbjct 1361561 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1361526 Score = 113 bits (124), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| |||| ||||||||| ||||| ||||| || ||| |||| |||| Sbjct 1459034 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1458975 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||||| || ||||||||| | || | ||||||||||| Sbjct 1458974 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1458915 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || |||| ||| || Sbjct 1458914 TGGATCTTGCTCTTGAC--AT--TGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGAT 1458859 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 |||||| || || | ||| || || ||| Sbjct 1458858 GGTCTTGCCGGTCAAGGTTTTGACGAAG 1458831 Score = 113 bits (124), Expect = 3e-20 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | || ||||||||| ||||| ||||| || || |||| | || Sbjct 1459262 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1459203 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| |||||||| || || || || |||||| | || | ||||||||||| Sbjct 1459202 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 1459143 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || || | ||| || Sbjct 1459142 TGGATCTTCGACTTGAC--AT--TGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGAT 1459087 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || ||||||||||| || ||||||||||| Sbjct 1459086 GGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1459051 Score = 84.2 bits (92), Expect = 1e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || ||||||||| ||||| ||||| | | || |||| Sbjct 1333671 CAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTCCGGCCATC 1333612 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || |||||||| || || ||||||||| | || | ||||||||||| Sbjct 1333611 CTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTC 1333552 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | |||| || | || || || | || ||||| Sbjct 1333551 CTGGATCTTCGACTTCACGTTGTCGATCGTGTCGGATGATTCTACCTCGAGCGTGATGGT 1333492 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || ||||| ||||| || ||||| |||||| Sbjct 1333491 CTTGCCTGTGAGAGTCTTGACGAAGATTTGCATG 1333458 >seq29 Length=482220 Score = 100 bits (110), Expect = 2e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||||| || ||||||||| ||||| ||||| || ||| |||| | || Sbjct 457303 CAGGACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTC 457244 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||||||||||| || |||||||| | || | ||||||||||| Sbjct 457243 CTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 457184 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| || ||||||||| || || ||||| || ||| |||| | || Sbjct 360697 AGGACCAGGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCC 360638 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||||||||||| || |||||||| | || | ||||||||||| Sbjct 360637 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 360579 >seq23 Length=594546 Score = 89.7 bits (98), Expect = 3e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 34821 CATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCT 34880 |||| || || |||||||||||||| |||| || ||||||||| |||| | ||||||| Sbjct 438908 CATCCTCAAGCTGCTTTCCGGCGAAAATCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCT 438967 Query 34881 TGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTA 34940 |||| | || || ||||| | |||| || | ||| || |||| ||| | Sbjct 438968 TGTCCTGGATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCCACCTCAAGGGTGA 439027 Query 34941 TGGTCTTTCCCGTGAGGGTCTTTACAAAG 34969 | ||||| |||||||||||||| || ||| Sbjct 439028 TAGTCTTGCCCGTGAGGGTCTTGACGAAG 439056 Score = 89.7 bits (98), Expect = 3e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| || || || | | |||| || || |||||||||||||| | Sbjct 495720 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 495779 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||| || ||||||||| |||| | ||||||||||| | || || ||||| Sbjct 495780 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 495839 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || | ||| || |||| ||| || ||||| |||||||||||||| || | Sbjct 495840 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGA 495899 Query 34968 AG 34969 || Sbjct 495900 AG 495901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325691879103608