Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 219 6e-51 seq19 109 8e-18 seq21 87.8 3e-11 >seq1 Length=3303888 Score = 219 bits (242), Expect = 6e-51 Identities = 363/510 (71%), Gaps = 18/510 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || ||||| ||||| || || ||||| || |||||| |||||| Sbjct 528356 GATATGGCAGATGTAC-AAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATCGACC 528414 Query 1455835 TCGGCGCCGACACGGTCC-ACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCA 1455888 | | || | | | | ||||| | ||| | | ||| |||||||| |||| Sbjct 528415 T-GTCGAAGGATCTGCACGACTGGAACAAGCGTCTC--AACGATGACGAGCGATTCTTCA 528471 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 | || || || ||||| || |||||| || ||||| || ||||||||||| | Sbjct 528472 TTTCACATGTGCTTGCCTTCTT-CGCCGCATCAGACGGCATTGTCAACGAGAACCTGGTC 528530 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | ||||| | ||||||||| | || || || || | || ||||| ||||||||| Sbjct 528531 GAGCGCTTCAGTGGTGAGGTCCAAATACCCGACGCTCGCTGCTTCTACGGCTTCCAGATC 528590 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || |||||||| || || |||||||||||| ||| || Sbjct 528591 ATGATGGAGAACATCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGTGAA 528650 Query 1456069 CCGGTCGAGAA-GGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || ||| || | || ||||||| ||||||||||| | || | | | || | Sbjct 528651 CC--TCGCCAACGCACATACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGA 528708 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 ||||| | ||||| | |||||||||| | | || || ||||| ||| | | || || Sbjct 528709 AGGCCAATTGGGCACTCAAGTGGATCAGCGACGA-TGCATCGAC-CTTCGGCTGCCGTCT 528766 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 | ||| || || || |||||||| ||||| ||||| ||| ||| ||||||||| || Sbjct 528767 CATCGCTTTCGCAGCTGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATCTTCTG 528826 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| ||||||||||| ||||||||||| || Sbjct 528827 GCTGAAGAAGCGCGGGCTCATGCCCGGCCT 528856 Score = 210 bits (232), Expect = 3e-48 Identities = 361/510 (71%), Gaps = 18/510 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||||||| | |||||| || ||||| ||||| || || ||||| || |||||| | || | Sbjct 493989 GATATGGCAGATGTAC-AAGAAGGCAGAGGCATCATTCTGGACAGCAGAGGAGATTGATC 494047 Query 1455835 TCGGCGCC-GACACGGTCCACTGG-----GTGTCGCTGAGCGACGACGAGCGCCATTTCA 1455888 | | || || | | ||||| | ||| | | || |||||||| |||| Sbjct 494048 T-GTCGAAAGATCTGCACGACTGGAACAAGCGTCTC--AATGATGACGAGCGATTCTTCA 494104 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 | || || || ||||| || |||||| || |||||||| ||||||||||| | Sbjct 494105 TTTCACATGTGCTTGCCTTCTT-CGCCGCATCAGACGGCATCGTCAACGAGAACCTGGTC 494163 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | ||||| ||| | || ||||| || | || ||||| ||||||||| Sbjct 494164 GAGCGATTCAGTGGCGAGGTGCAAATCCCTGAGGCTCGCTGCTTCTACGGCTTCCAGATC 494223 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || || |||||||| || |||||||| || || |||||||||||| ||| || Sbjct 494224 ATGATGGAGAATATCCACTCCGAGACCTACTCACTACTCATCGACACCTACATCAGCGAA 494283 Query 1456069 CCGGTCGAGAA-GGAC-CACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAA 1456126 || ||| || | || |||||||| ||||||||||| | |||| | | || | Sbjct 494284 CC--TCGCCAACGCACATACCTCTTTAACGCCATCGACAACATCCCGTGCATCCGCAAGA 494341 Query 1456127 AGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCT 1456186 ||||| ||||||| | |||||||||| | | || || ||||| ||| | | || || Sbjct 494342 AGGCCAACTGGGCACTAAAGTGGATCAGCGACGA-CGCATCGAC-CTTCGGCTGCCGTCT 494399 Query 1456187 CGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTG 1456245 | | | |||||| || ||||||||||| || ||||| || ||| ||| ||||| || Sbjct 494400 CATTGCCTTTGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTG 494459 Query 1456246 GCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||||||||||||||| || |||||||| || Sbjct 494460 GCTCAAGAAGCGCGGGCTGATGCCCGGCCT 494489 Score = 147 bits (162), Expect = 3e-29 Identities = 230/324 (71%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||| |||||| |||| || | ||| ||||||||| || |||| Sbjct 494528 TGCACACCGACTTCGCCTGTATGCTGCACGCACATCTCCGCAACAAGCCATCACTCGACC 494587 Query 1456512 TGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGC 1456571 | | | ||||||||| || || |||||||||||| ||||||| || || | | Sbjct 494588 TTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGTTCCTCTCAGACGCCC 494647 Query 1456572 TGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGT 1456631 | || || || ||||||||||||||| |||||||||||||||||| | | || || Sbjct 494648 TACCCTGCGCACTTCTCGGCATGAACGCCA-AGCTCATGTGCCAGTACATCG-AGTTCGT 494705 Query 1456632 CGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGT 1456691 ||| |||||||| ||| || |||||| ||| ||| ||||| | ||||||| | Sbjct 494706 CGCTGACCGCCTACTCCTCGCACTCGGCCACGG-CAAGTACTACAACGCCACCAACCCCT 494764 Query 1456692 TCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-G 1456750 || | |||||| ||||| |||| |||||||| ||||| |||||| ||||| | Sbjct 494765 TCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAG 494824 Query 1456751 GCGAGTACGCCAAGGCCGGCGTCA 1456774 | || ||| ||||| || |||| Sbjct 494825 GTGACTACCAGAAGGCTGGTGTCA 494848 Score = 138 bits (152), Expect = 2e-26 Identities = 228/324 (70%), Gaps = 4/324 (1%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGACG 1456511 ||||| ||||| ||||| |||| || | ||| ||||||||| || |||| Sbjct 528895 TGCACACCGACTTCGCCTGCATGCTGCACGCACATCTCCGCAACAAGCCATCACTCGACC 528954 Query 1456512 TGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGC 1456571 | | | ||||||||| || || |||||||| ||| ||||||| || || | | Sbjct 528955 TCGTCCACCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGTTCCTCTCGGACGCCC 529014 Query 1456572 TGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGT 1456631 |||| || || ||||||||||||||| |||||||||||||||||| | | ||||| Sbjct 529015 TGCCCTGCGCACTTCTCGGCATGAACGCCA-AGCTCATGTGCCAGTACATCG-AGTTTGT 529072 Query 1456632 CGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGT 1456691 ||| || ||||| ||| || || ||| | | ||| ||||| | ||||||| | Sbjct 529073 CGCTGATCGCCTACTCCTCGCACTTGGCCACAG-CAAGTACTACAACGCCACCAACCCCT 529131 Query 1456692 TCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-G 1456750 || | |||||| ||||| |||| |||||||| ||||| |||||| ||||| | Sbjct 529132 TCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCTTCGAGAAGCGCGTAG 529191 Query 1456751 GCGAGTACGCCAAGGCCGGCGTCA 1456774 | || ||| |||||||| |||| Sbjct 529192 GTGACTACCAGAAGGCCGGTGTCA 529215 >seq19 Length=770886 Score = 109 bits (120), Expect = 8e-18 Identities = 348/535 (65%), Gaps = 10/535 (2%) Strand=Plus/Minus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCG-ACAGCATGGCCTGCGCAACTCGTTGCT 262937 ||||| ||||| || || |||| ||| ||| | ||||||| | |||||||| |||| Sbjct 63037 TGGGATTGGGAAGCCCTCAAGGCG-CGGATCGCAGTGCATGGCGTCCGCAACTCTCTGCT 62979 Query 262938 CGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGA 262997 ||| |||| |||||||| || | || ||||||||| |||| || ||| || || Sbjct 62978 CGTCGCGCCTATGCCCACAGCAAGCACATCGCAGATCATGGGGTTCAATGAGTGCTTTGA 62919 Query 262998 GGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAA 263057 | ||| |||||||||||| | || || || || | ||||| || || ||||| Sbjct 62918 GCCGTACACCAGCAACATCTACTCTCGTCGTGTCCTGGCCGGCGAGTTCCAAGTCGTCAA 62859 Query 263058 CCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACTTTCGCGACCG 263117 || | ||| ||||| | | || | ||||| |||| | || | |||| Sbjct 62858 CCCCTGGCTGCTCAAGGACCTTGTCGACATGGGCCTCTGGAGCGACAACATGAAGAACCG 62799 Query 263118 GCTCATTGCGGCACAGGGCTCGGTGCAGGGCTTTGACGACGAGGAGGTGCCGCCCGATCT 263177 |||| || | ||||| | ||| || || | | | || ||| | Sbjct 62798 CATCATCGCAGATGGTGGCTCTATCCAGCGCATTCCC------AATATCCCCGACGAGAT 62745 Query 263178 CAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCATTGATATGGCGGC 263237 ||||| || | ||||| || |||||| | | | || | ||| | ||| | || Sbjct 62744 CAAGGAGCTGTATAAGACTGTCTGGGAGATCAGCCAGCGCAACATCATCCAGATGTCAGC 62685 Query 263238 CGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCGACCCGAC 263297 ||| || | ||| |||| ||| ||||||||| ||| | || | || ||||| Sbjct 62684 CGATCGTGGCGCCTTCATCGATCAGTCCCAGTCGCTAAACATCCACATGAAGGAGCCGAC 62625 Query 263298 GGCCGAGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAAGACTGGCAT 263357 | | | |||||||| |||||| | | ||||||| || || ||||||||||| Sbjct 62624 GATGGGCAAGATCACGTCCATGCACTTCACCGGCTGGCGTCTAGGACTTAAGACTGGCAT 62565 Query 263358 GTACTATCTGCGCACCCGGCCCGCTGCCAACG-CCATTCAATTCACCGTCGATCA 263411 |||||| || |||||| | |||| || || |||| || ||||| |||||||| Sbjct 62564 GTACTACCTCCGCACCATGGCCGC-CTCAGCGCCCATCCAGTTCACTGTCGATCA 62511 >seq21 Length=734177 Score = 87.8 bits (96), Expect = 3e-11 Identities = 110/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 724998 GACATGATCGACCGCATCGGCACCGAGGCCGGTC---GCCTGGCGCGCTCCAACAAGCGC 725054 ||||| |||| ||| ||| || |||||| || || | ||| || ||||||| Sbjct 488381 GACATCTTCGAGCGCGTCGCAACAGAGGCC--TCCAAGCTCGCCGC-CTACAACAAGAAG 488325 Query 725055 AACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTG 725114 ||| ||| | ||||||| |||||||| |||||||||| ||| | | ||| || || Sbjct 488324 TCCACCATCTCCTCGCGCGAAATCCAGACTTCCGTGCGCCTCATCCTTCCCGGTGAGCTC 488265 Query 725115 GCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| ||||||||| ||||||||||||| Sbjct 488264 GCCAAGCACGCCGTGTCCGAGGGCACCA 488237 Score = 87.8 bits (96), Expect = 3e-11 Identities = 110/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 724998 GACATGATCGACCGCATCGGCACCGAGGCCGGTC---GCCTGGCGCGCTCCAACAAGCGC 725054 ||||| |||| ||| ||| || |||||| || || | ||| || ||||||| Sbjct 511450 GACATCTTCGAGCGCGTCGCAACAGAGGCC--TCCAAGCTCGCCGC-CTACAACAAGAAG 511394 Query 725055 AACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTG 725114 ||| ||| | ||||||| |||||||| |||||||||| ||| | | ||| || || Sbjct 511393 TCCACCATCTCCTCGCGCGAAATCCAGACTTCCGTGCGCCTCATCCTCCCCGGTGAGCTC 511334 Query 725115 GCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| ||||||||| ||||||||||||| Sbjct 511333 GCCAAGCACGCCGTGTCCGAGGGCACCA 511306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177788823173584