Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq23 87.8 2e-12 >seq2 Length=2712501 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||||| | || |||||| || | ||| |||||| || |||||||| ||| | Sbjct 1333685 CCTCCACGTAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1333626 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||| ||||||||| || || || | ||||||||||| | || Sbjct 1333625 AACGTCCGGCCATCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGG 1333566 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| |||||| ||||| |||| | | ||||||| ||||| || Sbjct 1333565 ATACCCTCCTTGTCCTGGATCTTCGACTTCA-CGTTGTCGATCGTGTCGGATGATTCTAC 1333507 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||| || || || || | ||| || || || || ||||| Sbjct 1333506 CTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 1333459 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||||||| |||||| | |||| || Sbjct 1305836 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGCCGTCCTC 1305777 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || |||||| || || || || | ||||||||||| | || | | |||||| ||| Sbjct 1305776 CAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCTG 1305717 Query 35647 GATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||||| |||| | | |||||| ||||||||||| | |||||| || | Sbjct 1305716 AATCTTCGACTTCAC-GTTGTCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCT 1305658 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | ||| || || || || ||||| Sbjct 1305657 TGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1305627 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||||||| |||||| | |||| || Sbjct 1361963 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGCCGTCCTC 1361904 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || |||||| || || || || | ||||||||||| | || | | |||||| ||| Sbjct 1361903 CAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCTG 1361844 Query 35647 GATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||||| |||| | | |||||| ||||||||||| | |||||| || | Sbjct 1361843 AATCTTCGACTTCAC-GTTGTCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCT 1361785 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | ||| || || || || ||||| Sbjct 1361784 TGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1361754 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 |||||| || | ||| |||||| || |||||||||||| |||||| | |||| || Sbjct 1459488 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGCCGTCCTC 1459429 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || |||||| || || || || | ||||||||||| | || | | |||||| ||| Sbjct 1459428 CAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCTG 1459369 Query 35647 GATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTT 35705 ||||| ||||| |||| | | |||||| ||||||||||| | |||||| || | Sbjct 1459368 AATCTTCGACTTCAC-GTTGTCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCT 1459310 Query 35706 TACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || | ||| || || || || ||||| Sbjct 1459309 TGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1459279 Score = 102 bits (112), Expect = 7e-17 Identities = 135/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || || |||||||| || || || Sbjct 1305362 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1305303 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| || ||||||||| |||||| ||| | | | Sbjct 1305302 GATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATT 1305243 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| |||||||| | ||||| || || || ||||| ||||| Sbjct 1305242 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTT 1305186 Query 35722 CACAAA 35727 || || Sbjct 1305185 GACGAA 1305180 Score = 102 bits (112), Expect = 7e-17 Identities = 135/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || || |||||||| || || || Sbjct 1361489 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1361430 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| || ||||||||| |||||| ||| | | | Sbjct 1361429 GATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATT 1361370 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| |||||||| | ||||| || || || ||||| ||||| Sbjct 1361369 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTT 1361313 Query 35722 CACAAA 35727 || || Sbjct 1361312 GACGAA 1361307 Score = 102 bits (112), Expect = 7e-17 Identities = 135/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || || |||||||| || || || Sbjct 1459014 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1458955 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| || ||||||||| |||||| ||| | | | Sbjct 1458954 GATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATT 1458895 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| |||||||| | ||||| || || || ||||| ||||| Sbjct 1458894 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTTTT 1458838 Query 35722 CACAAA 35727 || || Sbjct 1458837 GACGAA 1458832 Score = 98.7 bits (108), Expect = 9e-16 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || || |||||||| || || || Sbjct 1333194 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 1333135 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||||| || ||||||||| |||||| ||| | | | Sbjct 1333134 GATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATT 1333075 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| |||||||| | ||||| || || || ||||| || || Sbjct 1333074 GTCGATGGTGTCGGAGCTC---TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTT 1333018 Query 35722 CACAAA 35727 || || Sbjct 1333017 TACGAA 1333012 Score = 98.7 bits (108), Expect = 9e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 35539 CGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACC 35598 |||| |||||| || |||||||| |||| | || || |||| || || ||||| || Sbjct 1333428 CGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGCTTGCC 1333369 Query 35599 CGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 || || || | ||||||||||| | ||||| || |||||||||| |||||| ||| Sbjct 1333368 GGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTTCGACTT 1333309 Query 35659 CAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAG 35717 | |||| | | |||||| || || ||||| | ||||| || || || || | | Sbjct 1333308 GA-CGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGG 1333250 Query 35718 TTTTCACAAATATCTGCATTC 35738 | || || || |||||||||| Sbjct 1333249 TCTTGACGAAGATCTGCATTC 1333229 >seq23 Length=594546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || ||||||||||| || || | | || || |||||||| || || || | Sbjct 495720 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 495779 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | | |||||||||| |||||| ||| | | | Sbjct 495780 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 495839 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | ||||||| ||| |||||||| | ||||| || || ||||| Sbjct 495840 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 495885 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||||| || || | | || || |||||||| || || || | Sbjct 438875 CCTTCTGGATGTTGTAATTACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 438934 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | || | | |||||||||| |||||| ||| | | | Sbjct 438935 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 438994 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | ||||||| ||| |||||||| | ||||| || || ||||| Sbjct 438995 CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 439040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792292698560