Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 125 1e-23 >seq1 Length=3303888 Score = 125 bits (138), Expect = 1e-23 Identities = 367/559 (66%), Gaps = 10/559 (2%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||||||||| || | |||||| || | ||| | ||||| || || ||||| Sbjct 494546 CAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAAGGTGAGG 494487 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || ||||| || || ||||| |||||||| || || || || || || ||||| ||||| Sbjct 494486 CCGGGCATCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGAGAAGAAA 494427 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT---TGTATCATTATGT 39793 ||||| || || |||||||| |||| || | ||| | | || || | Sbjct 494426 ATGCCCTCGACAGCTGCAAAGGCAATGAGACGGCAGCCGAAGGTCGATGCGTCGTCGCTG 494367 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 |||||||| ||||||| | || ||||| | || || || | || || || ||| Sbjct 494366 ATCCACTTTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGGATGTTGTCGATGGCGTTA 494307 Query 39854 AAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACAT 39912 ||||| | |||| || | || | | || || || || | || || | Sbjct 494306 AAGAGGT-ATGTGCGTTGGCGAGGTTCGCTGATGTAGGTGTCGATGAGTAGTGAGTAGGT 494248 Query 39913 TTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 39972 || || ||||| || || ||| ||||| || ||||| || || | || |||| || Sbjct 494247 CTCGGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCCTCAGGGAT 494188 Query 39973 TTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGC 40032 ||| ||||| || |||| || ||| || || || || || || || ||||| Sbjct 494187 TTGCACCTCGCCACTGAATCGCTCGACCAGGTTCTCGTTGACGATGCCGTCTGATGCGGC 494128 Query 40033 AAAAAATGCCAATACATGTTTAATAAAATAT---TTTTCATC-GGGTGTCAATTTATTCC 40088 || || || | |||||| ||| || || | ||||| | | | || |||| Sbjct 494127 GAAGAAGGCAAGCACATGTGAAATGAAGAATCGCTCGTCATCATTGAGAC-GCTTGTTCC 494069 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| | | |||||| || | ||| | || || |||||||| || || |||||||||| Sbjct 494068 AGTCGTGCAGATCTTTCGACAGATCAATCTCCTCTGCTGTCCAGAATGATGCCTCTGCCT 494009 Query 40149 TTTTGTACATGTTCCATAT 40167 | |||||||| | |||||| Sbjct 494008 TCTTGTACATCTGCCATAT 493990 Score = 109 bits (120), Expect = 8e-19 Identities = 364/560 (65%), Gaps = 10/560 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || | |||||| || | || | ||||| || || ||||| Sbjct 528914 GCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAG 528855 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| || || ||||| || ||||| || ||||| || || || ||||| ||||| Sbjct 528854 GCCGGGCATGAGCCCGCGCTTCTTCAGCCAGAAGATGGCGGCGAATGAGCCAGAGAAGAA 528795 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT---TGTATCATTATG 39792 ||| || || || ||||| || || | || | ||| | | || ||| | Sbjct 528794 GATACCCTCGACAGCTGCGAAAGCGATGAGACGGCAGCCGAAGGTCGATGCATCGTCGCT 528735 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||||| ||||||||| || ||||| | || || || | || || || || Sbjct 528734 GATCCACTTGAGTGCCCAATTGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTT 528675 Query 39853 AAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 ||||| | |||| || | || | | || || || || | || || Sbjct 528674 GAAGAGGT-ATGTGCGTTGGCGAGGTTCACTGATGTAGGTGTCGATGAGTAGTGAGTAGG 528616 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || || |||||||| || ||| ||||| || ||||| || || | || || | | Sbjct 528615 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGAGCGTCGGGTA 528556 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 |||| ||||| || || | || ||| || || || || || || || |||| Sbjct 528555 TTTGGACCTCACCACTGAAGCGCTCGACCAGGTTCTCGTTGACAATGCCGTCTGATGCGG 528496 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATAT---TTTTCATCG-GGTGTCAATTTATTC 40087 | || || || | |||||| ||| || || | |||||| | | | || ||| Sbjct 528495 CGAAGAAGGCAAGCACATGTGAAATGAAGAATCGCTCGTCATCGTTGAGAC-GCTTGTTC 528437 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 ||||| | | ||| || || | || | || || |||||||| || || ||||||||| Sbjct 528436 CAGTCGTGCAGATCCTTCGACAGGTCGATCTCCTCTGCTGTCCAGAATGATGCCTCTGCC 528377 Query 40148 TTTTTGTACATGTTCCATAT 40167 || |||||||| | |||||| Sbjct 528376 TTCTTGTACATCTGCCATAT 528357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906807964480