Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 >seq2 Length=2712501 Score = 105 bits (116), Expect = 6e-18 Identities = 170/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 27007 TTTCATAATTATTGCC-TCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGA 27065 || || | ||| |||| ||| |||| || | ||||| || | ||| || || || || Sbjct 1305868 TTGCACATTTACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGG 1305809 Query 27066 ATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGC 27125 || ||||| ||||||| | | | |||| || | ||| || || ||| | ||||||||| Sbjct 1305808 ATGTTGTAATCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGC 1305749 Query 27126 TGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTG 27185 || || || || || | |||||| ||||| ||||| |||| | | || | ||| Sbjct 1305748 TGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTG 1305689 Query 27186 TCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGC 27245 |||| | ||| || || || || || | ||||| || ||||| || || || |||||| Sbjct 1305688 TCTGATGATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGC 1305629 Query 27246 ATA 27248 ||| Sbjct 1305628 ATA 1305626 Score = 105 bits (116), Expect = 6e-18 Identities = 170/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 27007 TTTCATAATTATTGCC-TCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGA 27065 || || | ||| |||| ||| |||| || | ||||| || | ||| || || || || Sbjct 1361995 TTGCACATTTACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGG 1361936 Query 27066 ATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGC 27125 || ||||| ||||||| | | | |||| || | ||| || || ||| | ||||||||| Sbjct 1361935 ATGTTGTAATCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGC 1361876 Query 27126 TGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTG 27185 || || || || || | |||||| ||||| ||||| |||| | | || | ||| Sbjct 1361875 TGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTG 1361816 Query 27186 TCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGC 27245 |||| | ||| || || || || || | ||||| || ||||| || || || |||||| Sbjct 1361815 TCTGATGATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGC 1361756 Query 27246 ATA 27248 ||| Sbjct 1361755 ATA 1361753 Score = 105 bits (116), Expect = 6e-18 Identities = 170/243 (70%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 27007 TTTCATAATTATTGCC-TCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGA 27065 || || | ||| |||| ||| |||| || | ||||| || | ||| || || || || Sbjct 1459520 TTGCACATTTACTGCCCTCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGG 1459461 Query 27066 ATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGC 27125 || ||||| ||||||| | | | |||| || | ||| || || ||| | ||||||||| Sbjct 1459460 ATGTTGTAATCGCTCAAGGTCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGC 1459401 Query 27126 TGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTG 27185 || || || || || | |||||| ||||| ||||| |||| | | || | ||| Sbjct 1459400 TGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTG 1459341 Query 27186 TCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGC 27245 |||| | ||| || || || || || | ||||| || ||||| || || || |||||| Sbjct 1459340 TCTGATGATTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGC 1459281 Query 27246 ATA 27248 ||| Sbjct 1459280 ATA 1459278 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | |||| ||||| || | ||| || || || || || |||||||||||| Sbjct 1333685 CCTCCACGTAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTC 1333626 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || | ||| ||||| ||| | || |||||||| || || || || Sbjct 1333625 AACGTCCGGCCATCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGG 1333566 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || |||||| |||| | | || | ||||| | | ||| || Sbjct 1333565 ATACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATCGTGTCGGATGATTCTACC 1333506 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || ||||| || || ||||||||||| Sbjct 1333505 TCGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 1333459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424933198497984