Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 178 2e-39 >seq1 Length=3303888 Score = 178 bits (196), Expect = 2e-39 Identities = 449/665 (68%), Gaps = 22/665 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 529198 TAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCATG 529139 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGCTGGCACTCCAATCTGTTTGAGGAGA- 129844 || || || ||||| | | ||| | | |||||| | ||| || |||||| Sbjct 529138 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCTGTGGC--CAA---GTGCGAGGAGTA 529084 Query 129845 --CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGT 129902 ||||| | ||| |||| ||||||| |||| || || |||||| |||| || Sbjct 529083 GGCGATCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTG 529024 Query 129903 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGG 129962 || || || |||||| ||| |||| | | |||||| || ||||||||| | ||| Sbjct 529023 CGCAGGGCAGGGCGTCCGAGAGGAACTCTTGCTCAATCTCGACAGCTTCCGTGATGATCT 528964 Query 129963 CGTGAATGGTCTCC-GTGCCAGGTCTATTGCGCAAA-GT-CTTGAAGAGTTCCACGGCAA 130019 ||| | | || ||| | | | ||||| | | || | || || | | ||| | Sbjct 528963 GGTGGACGAGGTCGAGTGATGGCT-TGTTGCGGAGATGTGCGTGCAGCATGCA--GGCGA 528907 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| | |||||||||||||||||||| || || |||||| || || |||| Sbjct 528906 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCA 528847 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || |||||||||| |||||| || || |||||||||||||||||||| |||| Sbjct 528846 TGAGCCCGCGCTTCTTCAGCCAGAAGATGGCGGCGAATGAGCCAGAGAAGAAGATACCCT 528787 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC-AAACCAC 130198 | ||| ||||| || | |||||| |||| | | || | | || | | |||| Sbjct 528786 CGACAGCTGCGAAAGCGATGAGACG-GCAGCCGAAGGTCGATGCATCGTCGCTGATCCAC 528728 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA-G 130257 || | ||||| | ||||| || ||| || |||| | | | ||| || | |||| | Sbjct 528727 TTGAGTGCCCAATTGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGG 528668 Query 130258 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 130317 | | | || || || || ||||||| | || |||||| ||| || || ||| Sbjct 528667 TATGTGCGTTGGCGA-GGTTCACTGATGTAGGTGTCGATGAGTAGTGAGTAGGTCTCGGA 528609 Query 130318 ATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 130376 |||| | | ||| || | ||| | ||||||| |||| || ||| ||| || | Sbjct 528608 GTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGAGCGTCGGGTATTTGGA 528550 Query 130377 CCTCA 130381 ||||| Sbjct 528549 CCTCA 528545 Score = 141 bits (156), Expect = 1e-28 Identities = 363/539 (67%), Gaps = 18/539 (3%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| ||| | | | ||| |||||||| Sbjct 494831 TAGTCACCTACGCGCTTCTCGAAGAAGTTCGTCTTGCCGGCGAGGGAGATGTTCTCCATG 494772 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA--AATTGC--TGGCACTCCAATCTGTTTGAGGAG 129843 || || || ||||| | | ||| | | |||| |||| | | | | ||| || Sbjct 494771 AAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGCCGTGGC---CGAGTGCGAG-GAGTAG 494716 Query 129844 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT 129903 || || | |||| |||| ||||||| |||| || || |||||| |||| || Sbjct 494715 GCGGTCAGCGACGAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCGAGAAGTGC 494656 Query 129904 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 || || || ||||| ||| |||| | | ||| || || ||||||||| | ||| Sbjct 494655 GCAGGGTAGGGCGTCTGAGAGGAACTCTTGCTCGATCTCGACAGCTTCCGTGATGATCTG 494596 Query 129964 GTGAAT--GGTCTCCGTGCCAGGTCTATTGCGCAAA-GT-CTTGAAGAGTTCCACGGCAA 130019 ||| | |||| ||| | | | ||||| | | || | || || | | ||| | Sbjct 494595 GTGGACAAGGTCGA-GTGATGGCT-TGTTGCGGAGATGTGCGTGCAGCATACA--GGCGA 494540 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| | |||||||||||||| ||||| || || |||||| || || |||| Sbjct 494539 AGTCGGTGTGCATGCCCTCGTCACGGGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCA 494480 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 | || || |||||||| | |||||| || || || || ||||||||||| || |||| Sbjct 494479 TCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCGAACGAACCAGAGAAGAAAATGCCCT 494420 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC-AAACCAC 130198 | ||| || || |||| |||||| |||| | | || | | || | | |||| Sbjct 494419 CGACAGCTGCAAAGGCAATGAGACG-GCAGCCGAAGGTCGATGCGTCGTCGCTGATCCAC 494361 Query 130199 TTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAG 130257 || | ||||| | ||||| || ||| ||||||| | | | ||| || | |||||| Sbjct 494360 TTTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGGATGTTGTCGATGGCGTTAAAGAG 494302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433406537920