Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 seq6 98.7 1e-15 seq112 95.1 1e-14 >seq1 Length=3303888 Score = 134 bits (148), Expect = 2e-26 Identities = 300/442 (68%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 || ||| |||| || || ||| |||||||||||||||||||| || ||| ||| || Sbjct 528762 CGTCTCATCGCTTTCGCAGCTGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATC 528821 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | ||||| |||||||| || |||||||| || ||| ||||||||||||||| ||||| Sbjct 528822 TTCTGGCTGAAGAAGCGCGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCC 528881 Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGA-ACTTTTCAAATTATTGCGTATTAA 94985 ||||||||||| | ||| || || || || | || | | | || | || Sbjct 528882 CGTGACGAGGGCATGCACACCGACTTCGC-CTGCATGCTGCACGCACATCTCCGCAACAA 528940 Query 94986 ACCAACGACT-GAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGAT 95044 ||| | ||| || | || || | | |||||| || ||||||||| ||| | Sbjct 528941 GCCATC-ACTCGACCTCGTCCACCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGT 528999 Query 95045 TCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAAT 95104 || | | ||| ||||| || ||||| || |||| ||||| | | |||| | | Sbjct 529000 TCCTCTCGGACGCCCTGCCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGT 529059 Query 95105 ATATTGAGTATGTATCTGATAG-ATTGTTGAAGCAGATCGGGGTGCCTCCAATT--TGGA 95161 | || |||| ||| ||||| | | | ||| | || | ||| | | | Sbjct 529060 ACATCGAGTTTGTCGCTGATCGCCTACTCCTCGCA---CTTGGCCACAGCAAGTACTACA 529116 Query 95162 ACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCT 95221 || ||| || || || ||||||||||||||||| ||||| ||| ||||| ||||||| Sbjct 529117 ACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCT 529176 Query 95222 TCGAAAAGAGGGTTGGGGACTA 95243 |||| ||| | || || ||||| Sbjct 529177 TCGAGAAGCGCGTAGGTGACTA 529198 Score = 123 bits (136), Expect = 3e-23 Identities = 166/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCA-AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAA 94772 |||||| | |||||| | |||| | ||||| || | ||||| || | ||||| | || Sbjct 494302 CTCTTTAACGCCATCGACAACA-TCCCGTGCATCCGCAAGAAGGCCAACTGGGCACTAAA 494360 Query 94773 GTGGTTT-GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTG 94831 |||| | | || | | || | | |||| || ||| | || ||||| ||| | Sbjct 494361 GTGGATCAGCGACGACGCATCGACCTTCGGCTGC-CGTCTCATTGCCTTTGCAGCTGTCG 494419 Query 94832 AGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891 |||| || |||||||||||||| ||| |||||| | |||||||||||||| || || | Sbjct 494420 AGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGGCTGA 494479 Query 94892 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 |||| || ||| ||||||||||||||| || || ||||||||||| Sbjct 494480 TGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGG 494525 >seq6 Length=1760288 Score = 98.7 bits (108), Expect = 1e-15 Identities = 222/325 (68%), Gaps = 14/325 (4%) Strand=Plus/Minus Query 169172 CCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCG- 169230 |||||||| || |||||||||| || ||||||||||||||||||| |||| || || Sbjct 198946 CCCTTGATATGCGAACCGTCGTGGTCTTGATCCGTCATGATCATGAGATGACCGTATCGC 198887 Query 169231 --AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGA-G 169287 | || || ||||| |||||||| || || | ||||| || |||||||| | Sbjct 198886 AAACCCTTGG---TGTCTTGGTAGTCCTTCTTATGCTGCAAACCCATGAACTTCTTGATG 198830 Query 169288 ATCGTTGAA-CTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTAC 169346 || |||| ||| |||| || || ||| || || ||||| || || ||| Sbjct 198829 TTC--TGAATTTCTGCGTTTTTTGAGATCTGGTCGATGGACGCATCTCGTACGTTCAGCA 198772 Query 169347 ACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGA 169406 ||| ||||| | |||||||||||| || |||| || || || | | || || | Sbjct 198771 TCTTACCACGCAAAGGGAAGACACCAAAGAGATCTGGATTCACTACCGCACGGCCAGCCA 198712 Query 169407 CTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTG 169466 || || | || |||||||| || || | |||||| ||||| |||||| || Sbjct 198711 GGGCTAGTAACGATGCAGAGTCACCTTCAGTCAGGATGAGGGTACA-CTTCCAG-CCGTC 198654 Query 169467 C--CGTACCCGCCTTGTTCGCATCA 169489 | || || |||||||| |||||| Sbjct 198653 CTTGGTGCCAGCCTTGTTGGCATCA 198629 Score = 89.7 bits (98), Expect = 6e-13 Identities = 218/325 (67%), Gaps = 8/325 (2%) Strand=Plus/Minus Query 169169 AGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATAC 169228 ||||||||||| || ||||| |||| ||| ||||||||||||||| || |||| || Sbjct 172945 AGACCCTTGATATGCGAACCATCGTGATCTTGATCCGTCATGATCATAAGGTGACCGTAT 172886 Query 169229 CGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGA 169288 || || | ||||| |||||||| || || | |||| || |||||||| Sbjct 172885 CGCAGACCTTTGGTGTCTTGGTAGTCCTTCTTATGCTGCAAGCCCATGAACTTCTTGATG 172826 Query 169289 TCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACA- 169347 | | || |||| ||| || || ||| || || || || || ||||| | || Sbjct 172825 TTCTGGATCTCTGCGTTCTTTGAGATCTGGTCGATGGATGCGTCTCGTACATT-TAGCAT 172767 Query 169348 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGAC 169407 ||| ||||| || || || || ||| || |||| || || || | | ||||| | Sbjct 172766 CTTACCACGCAGGGGAAATACGCCGAAGAGATCTGGATTCACTACTGCACGGCCCGCCAG 172707 Query 169408 TGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT---TCCAGATTG 169464 || || | || |||||||| || || | ||||| ||||| || |||| | Sbjct 172706 GGCTAGCAACGATGCAGAGTCACCTTCAGTCAGAATGAGGGTACACTTCCATCCATCCT- 172648 Query 169465 TGCCGTACCCGCCTTGTTCGCATCA 169489 || || || ||||||||||||||| Sbjct 172647 TG--GTGCCAGCCTTGTTCGCATCA 172625 >seq112 Length=9096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 303/459 (66%), Gaps = 31/459 (7%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 || ||||| ||||| || | ||| || | ||||||| ||| |||||||| | ||| Sbjct 5119 TCGAAGCGCCCTGGTCGCATGAGTGCTTTGTCAAGGACATCTGGTCGATTCGTGCCAGCG 5060 Query 9587 ATGACAACAATACCTGTTTCAT--TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 | || || | | || | | | | | || || |||||||||||||||| ||||| | Sbjct 5059 AGTACGACGA--CTTGGTCCGTGGTGTTGAAGCCGTCCATCTCTGTCAAAATCTGGTTCA 5002 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGC--ACTGCGTTGCT------- 9695 || || || || ||||| | ||| ||| ||||| | ||| Sbjct 5001 GCGTACTCTCGCGCTCGTCATTGCC------ACCTCCAAATGACTGCTTCGCTCTTGCCT 4948 Query 9696 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG--GTTGATTTTCGCGAGCGAC 9753 |||| | ||||| |||||||||||||||| |||||||| || || ||| || || Sbjct 4947 TTCCAATAGCATCGATCTCATCAATGAAGATGATGCATGGTGTCGACTTT--CGTGCATT 4890 Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813 | || || || || ||||| | || ||||| || ||||||||||| || | | Sbjct 4889 GGCGAAAAGGTCTCGCACACGGGAAGGACCGACACCGACGAACATCTCCACGAACTCAGA 4830 Query 9814 GGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872 | || || | || ||| || ||| ||| || || || ||||| ||||| | | Sbjct 4829 TCCCGACACGCT-GAAGAATGGCACACCAGACTCGCCAGCCGTGGCTTTTGCGAGTAACG 4771 Query 9873 TCTTACCCGTACCTGGCTTACCCGC-GAGGAGGGCACCTCGTGGAATCTTGGCGCCA--C 9929 ||||||| ||||| || | |||| | || ||||||| |||||||| |||||| | Sbjct 4770 TCTTACCAGTACCAGG-TGGTCCGCTCAAGATCGCACCTCTAGGAATCTTCGCGCCAAGC 4712 Query 9930 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 || | | ||||||| ||||| || || | ||||| Sbjct 4711 TT--GGTGAAGATCTCAGGCTGCTTGAGGAATTGCACAA 4675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583259108543680