Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1 134 2e-26
seq6 98.7 1e-15
seq112 95.1 1e-14
>seq1
Length=3303888
Score = 134 bits (148), Expect = 2e-26
Identities = 300/442 (68%), Gaps = 10/442 (2%)
Strand=Plus/Plus
Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866
|| ||| |||| || || ||| |||||||||||||||||||| || ||| ||| ||
Sbjct 528762 CGTCTCATCGCTTTCGCAGCTGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATC 528821
Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926
| ||||| |||||||| || |||||||| || ||| ||||||||||||||| |||||
Sbjct 528822 TTCTGGCTGAAGAAGCGCGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCC 528881
Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGA-ACTTTTCAAATTATTGCGTATTAA 94985
||||||||||| | ||| || || || || | || | | | || | ||
Sbjct 528882 CGTGACGAGGGCATGCACACCGACTTCGC-CTGCATGCTGCACGCACATCTCCGCAACAA 528940
Query 94986 ACCAACGACT-GAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGAT 95044
||| | ||| || | || || | | |||||| || ||||||||| ||| |
Sbjct 528941 GCCATC-ACTCGACCTCGTCCACCAGATCATCACGGAAGCTGTCGAGATTGAGCAAGAGT 528999
Query 95045 TCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAAT 95104
|| | | ||| ||||| || ||||| || |||| ||||| | | |||| | |
Sbjct 529000 TCCTCTCGGACGCCCTGCCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGT 529059
Query 95105 ATATTGAGTATGTATCTGATAG-ATTGTTGAAGCAGATCGGGGTGCCTCCAATT--TGGA 95161
| || |||| ||| ||||| | | | ||| | || | ||| | | |
Sbjct 529060 ACATCGAGTTTGTCGCTGATCGCCTACTCCTCGCA---CTTGGCCACAGCAAGTACTACA 529116
Query 95162 ACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCT 95221
|| ||| || || || ||||||||||||||||| ||||| ||| ||||| |||||||
Sbjct 529117 ACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTTCT 529176
Query 95222 TCGAAAAGAGGGTTGGGGACTA 95243
|||| ||| | || || |||||
Sbjct 529177 TCGAGAAGCGCGTAGGTGACTA 529198
Score = 123 bits (136), Expect = 3e-23
Identities = 166/226 (73%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 94714 CTCTTTGAAGCCATCCA-AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAA 94772
|||||| | |||||| | |||| | ||||| || | ||||| || | ||||| | ||
Sbjct 494302 CTCTTTAACGCCATCGACAACA-TCCCGTGCATCCGCAAGAAGGCCAACTGGGCACTAAA 494360
Query 94773 GTGGTTT-GATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTG 94831
|||| | | || | | || | | |||| || ||| | || ||||| ||| |
Sbjct 494361 GTGGATCAGCGACGACGCATCGACCTTCGGCTGC-CGTCTCATTGCCTTTGCAGCTGTCG 494419
Query 94832 AGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891
|||| || |||||||||||||| ||| |||||| | |||||||||||||| || || |
Sbjct 494420 AGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATCTTCTGGCTCAAGAAGCGCGGGCTGA 494479
Query 94892 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937
|||| || ||| ||||||||||||||| || || |||||||||||
Sbjct 494480 TGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCCCGTGACGAGGG 494525
>seq6
Length=1760288
Score = 98.7 bits (108), Expect = 1e-15
Identities = 222/325 (68%), Gaps = 14/325 (4%)
Strand=Plus/Minus
Query 169172 CCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATACCG- 169230
|||||||| || |||||||||| || ||||||||||||||||||| |||| || ||
Sbjct 198946 CCCTTGATATGCGAACCGTCGTGGTCTTGATCCGTCATGATCATGAGATGACCGTATCGC 198887
Query 169231 --AAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGA-G 169287
| || || ||||| |||||||| || || | ||||| || |||||||| |
Sbjct 198886 AAACCCTTGG---TGTCTTGGTAGTCCTTCTTATGCTGCAAACCCATGAACTTCTTGATG 198830
Query 169288 ATCGTTGAA-CTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTAC 169346
|| |||| ||| |||| || || ||| || || ||||| || || |||
Sbjct 198829 TTC--TGAATTTCTGCGTTTTTTGAGATCTGGTCGATGGACGCATCTCGTACGTTCAGCA 198772
Query 169347 ACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGA 169406
||| ||||| | |||||||||||| || |||| || || || | | || || |
Sbjct 198771 TCTTACCACGCAAAGGGAAGACACCAAAGAGATCTGGATTCACTACCGCACGGCCAGCCA 198712
Query 169407 CTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTTTCCAGATTGTG 169466
|| || | || |||||||| || || | |||||| ||||| |||||| ||
Sbjct 198711 GGGCTAGTAACGATGCAGAGTCACCTTCAGTCAGGATGAGGGTACA-CTTCCAG-CCGTC 198654
Query 169467 C--CGTACCCGCCTTGTTCGCATCA 169489
| || || |||||||| ||||||
Sbjct 198653 CTTGGTGCCAGCCTTGTTGGCATCA 198629
Score = 89.7 bits (98), Expect = 6e-13
Identities = 218/325 (67%), Gaps = 8/325 (2%)
Strand=Plus/Minus
Query 169169 AGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGACGACCATAC 169228
||||||||||| || ||||| |||| ||| ||||||||||||||| || |||| ||
Sbjct 172945 AGACCCTTGATATGCGAACCATCGTGATCTTGATCCGTCATGATCATAAGGTGACCGTAT 172886
Query 169229 CGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATCTTCTTGAGA 169288
|| || | ||||| |||||||| || || | |||| || ||||||||
Sbjct 172885 CGCAGACCTTTGGTGTCTTGGTAGTCCTTCTTATGCTGCAAGCCCATGAACTTCTTGATG 172826
Query 169289 TCGTTGAACTCTTGGTTTGATGTGAGCTGTGTGACAGAGGCATCGCGAACATTCTTACA- 169347
| | || |||| ||| || || ||| || || || || || ||||| | ||
Sbjct 172825 TTCTGGATCTCTGCGTTCTTTGAGATCTGGTCGATGGATGCGTCTCGTACATT-TAGCAT 172767
Query 169348 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGAC 169407
||| ||||| || || || || ||| || |||| || || || | | ||||| |
Sbjct 172766 CTTACCACGCAGGGGAAATACGCCGAAGAGATCTGGATTCACTACTGCACGGCCCGCCAG 172707
Query 169408 TGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT---TCCAGATTG 169464
|| || | || |||||||| || || | ||||| ||||| || |||| |
Sbjct 172706 GGCTAGCAACGATGCAGAGTCACCTTCAGTCAGAATGAGGGTACACTTCCATCCATCCT- 172648
Query 169465 TGCCGTACCCGCCTTGTTCGCATCA 169489
|| || || |||||||||||||||
Sbjct 172647 TG--GTGCCAGCCTTGTTCGCATCA 172625
>seq112
Length=9096
Score = 95.1 bits (104), Expect = 1e-14
Identities = 303/459 (66%), Gaps = 31/459 (7%)
Strand=Plus/Minus
Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586
|| ||||| ||||| || | ||| || | ||||||| ||| |||||||| | |||
Sbjct 5119 TCGAAGCGCCCTGGTCGCATGAGTGCTTTGTCAAGGACATCTGGTCGATTCGTGCCAGCG 5060
Query 9587 ATGACAACAATACCTGTTTCAT--TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644
| || || | | || | | | | | || || |||||||||||||||| ||||| |
Sbjct 5059 AGTACGACGA--CTTGGTCCGTGGTGTTGAAGCCGTCCATCTCTGTCAAAATCTGGTTCA 5002
Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGC--ACTGCGTTGCT------- 9695
|| || || || ||||| | ||| ||| ||||| | |||
Sbjct 5001 GCGTACTCTCGCGCTCGTCATTGCC------ACCTCCAAATGACTGCTTCGCTCTTGCCT 4948
Query 9696 TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG--GTTGATTTTCGCGAGCGAC 9753
|||| | ||||| |||||||||||||||| |||||||| || || ||| || ||
Sbjct 4947 TTCCAATAGCATCGATCTCATCAATGAAGATGATGCATGGTGTCGACTTT--CGTGCATT 4890
Query 9754 TTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9813
| || || || || ||||| | || ||||| || ||||||||||| || | |
Sbjct 4889 GGCGAAAAGGTCTCGCACACGGGAAGGACCGACACCGACGAACATCTCCACGAACTCAGA 4830
Query 9814 GGCGGA-ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9872
| || || | || ||| || ||| ||| || || || ||||| ||||| | |
Sbjct 4829 TCCCGACACGCT-GAAGAATGGCACACCAGACTCGCCAGCCGTGGCTTTTGCGAGTAACG 4771
Query 9873 TCTTACCCGTACCTGGCTTACCCGC-GAGGAGGGCACCTCGTGGAATCTTGGCGCCA--C 9929
||||||| ||||| || | |||| | || ||||||| |||||||| |||||| |
Sbjct 4770 TCTTACCAGTACCAGG-TGGTCCGCTCAAGATCGCACCTCTAGGAATCTTCGCGCCAAGC 4712
Query 9930 TTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968
|| | | ||||||| ||||| || || | |||||
Sbjct 4711 TT--GGTGAAGATCTCAGGCTGCTTGAGGAATTGCACAA 4675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583259108543680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |