Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq19 158 1e-33
seq1 132 5e-26
>seq19
Length=770886
Score = 158 bits (174), Expect = 1e-33
Identities = 307/446 (69%), Gaps = 7/446 (2%)
Strand=Plus/Minus
Query 20375 CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAAC 20434
|||||||| ||||||||||||| ||||| || || || | |||||||||||| |
Sbjct 62992 CGCAACTCTCTGCTCGTCGCGCCTATGCCCACAGCAAGCACATCGCAGATCATGGGGTTC 62933
Query 20435 AACGAG-GCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGA 20493
|| ||| ||||| ||||||||||| | ||||||||||| |||||| |||||||| ||
Sbjct 62932 AATGAGTGCTTT-GAGCCGTACACCAGCAACATCTACTCTCGTCGTGTCCTGGCCGGCGA 62874
Query 20494 GTTCGTCATGGTAAACAAGCACCTGGTCCGCGAC-TTGCAGAAGATCGATATGTGGTCGC 20552
|||| | || ||| ||| || ||| ||| || || | | |||
Sbjct 62873 GTTCCAAGTCGTCAACCCCTGGCTGCTCAAGGACCTTGTCGAC-ATGGGCCTCTGGAGCG 62815
Query 20553 CCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAG-GCATTGG--ATATCC 20609
||| || ||||| || || || || || ||||| ||||| ||||||
Sbjct 62814 ACAACATGAAGAACCGCATCATCGCAGATGGTGGCTCTATCCAGCGCATTCCCAATATCC 62755
Query 20610 CCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCG 20669
|| | | ||||||| | || | ||| || ||||| ||| ||| | |||||||
Sbjct 62754 CCGACGAGATCAAGGAGCTGTATAAGACTGTCTGGGAGATCAGCCAGCGCAACATCATCC 62695
Query 20670 ACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGG 20729
| ||| | |||||||| ||||||| |||||| |||||||||||||| || || ||||
Sbjct 62694 AGATGTCAGCCGATCGTGGCGCCTTCATCGATCAGTCCCAGTCGCTAAACATCCACATGA 62635
Query 20730 AGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCA 20789
|| | |||| ||| ||| | | |||||||| | |||||||| || || |
Sbjct 62634 AGGAGCCGACGATGGGCAAGATCACGTCCATGCACTTCACCGGCTGGCGTCTAGGACTTA 62575
Query 20790 AGACGGGCATGTACTATCTGCGGACC 20815
|||| ||||||||||| || || |||
Sbjct 62574 AGACTGGCATGTACTACCTCCGCACC 62549
Score = 91.5 bits (100), Expect = 2e-13
Identities = 102/134 (76%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CT 78565
|||||||||||||||| || || |||||||||| | ||||||||||| ||||| ||
Sbjct 62870 GAACTCGCCGGCCAGGACACGACGAGAGTAGATGTTGCTGGTGTACGGCTC-AAAGCACT 62928
Query 78566 CGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAAT 78625
| ||| |||||||||||| | || || || ||||| || ||||| || ||||| |
Sbjct 62929 CATTGAACCCCATGATCTGCGATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGAGAGT 62988
Query 78626 TCCGAAGACCATGC 78639
| || | ||||||
Sbjct 62989 TGCGGACGCCATGC 63002
>seq1
Length=3303888
Score = 132 bits (146), Expect = 5e-26
Identities = 299/444 (67%), Gaps = 14/444 (3%)
Strand=Plus/Plus
Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041
|||||||| || |||||| || || || || ||||||||||| |||||| |||||
Sbjct 494395 CGTCTCATTGCCTTTGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATC 494454
Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101
||||||||||| ||||| || || ||||| ||||| | |||||||||||||| ||||||
Sbjct 494455 TTCTGGCTCAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCC 494514
Query 60102 CGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATTGGAAAAA 60161
|| ||||||||| | || || || || | ||| | | ||| | | | || |
Sbjct 494515 CGTGACGAGGGCATGCACACCGACTTCGCCTGTATGCTGCA--CGCACATCTCCGCAACA 494572
Query 60162 TGCC--CTTCCAAGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGT 60219
||| | | | | | ||| |||| | | ||| || | ||| ||||
Sbjct 494573 AGCCATCACTCGACCTTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGT 494632
Query 60220 TCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGT 60279
|| || |||| || || || ||| ||| | || ||| |||| ||| ||||
Sbjct 494633 TCCTCTCAGACGCCCTACCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGT 494692
Query 60280 ACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAGGACCAATT--TA 60334
|||| |||| ||||| |||||| ||| | || | | || | || ||| | ||
Sbjct 494693 ACATCGAGTTCGTCGCTGACCGCCTACTCCTCGCAC---TCGGCCACGG--CAAGTACTA 494747
Query 60335 CGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTT 60394
| || | ||||| ||||||| ||||||| |||||| | | || ||||| |||||
Sbjct 494748 CAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTT 494807
Query 60395 CTTTGAGAAGCGGGTCGGGGATTA 60418
||| |||||||| || || || ||
Sbjct 494808 CTTCGAGAAGCGCGTAGGTGACTA 494831
Score = 125 bits (138), Expect = 8e-24
Identities = 107/132 (81%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041
|||||||| ||||| ||| || || || ||||||||||||||||| ||| || ||
Sbjct 528762 CGTCTCATCGCTTTCGCAGCTGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATC 528821
Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101
|||||||| || ||||| || |||||||| ||||| | |||||||||||||| || |||
Sbjct 528822 TTCTGGCTGAAGAAGCGCGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCC 528881
Query 60102 CGGGACGAGGGC 60113
|| |||||||||
Sbjct 528882 CGTGACGAGGGC 528893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548523209278080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |