Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq19 158 1e-33 seq1 132 5e-26 >seq19 Length=770886 Score = 158 bits (174), Expect = 1e-33 Identities = 307/446 (69%), Gaps = 7/446 (2%) Strand=Plus/Minus Query 20375 CGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAAC 20434 |||||||| ||||||||||||| ||||| || || || | |||||||||||| | Sbjct 62992 CGCAACTCTCTGCTCGTCGCGCCTATGCCCACAGCAAGCACATCGCAGATCATGGGGTTC 62933 Query 20435 AACGAG-GCTTTCGAGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGA 20493 || ||| ||||| ||||||||||| | ||||||||||| |||||| |||||||| || Sbjct 62932 AATGAGTGCTTT-GAGCCGTACACCAGCAACATCTACTCTCGTCGTGTCCTGGCCGGCGA 62874 Query 20494 GTTCGTCATGGTAAACAAGCACCTGGTCCGCGAC-TTGCAGAAGATCGATATGTGGTCGC 20552 |||| | || ||| ||| || ||| ||| || || | | ||| Sbjct 62873 GTTCCAAGTCGTCAACCCCTGGCTGCTCAAGGACCTTGTCGAC-ATGGGCCTCTGGAGCG 62815 Query 20553 CCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTCCAG-GCATTGG--ATATCC 20609 ||| || ||||| || || || || || ||||| ||||| |||||| Sbjct 62814 ACAACATGAAGAACCGCATCATCGCAGATGGTGGCTCTATCCAGCGCATTCCCAATATCC 62755 Query 20610 CCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCG 20669 || | | ||||||| | || | ||| || ||||| ||| ||| | ||||||| Sbjct 62754 CCGACGAGATCAAGGAGCTGTATAAGACTGTCTGGGAGATCAGCCAGCGCAACATCATCC 62695 Query 20670 ACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGG 20729 | ||| | |||||||| ||||||| |||||| |||||||||||||| || || |||| Sbjct 62694 AGATGTCAGCCGATCGTGGCGCCTTCATCGATCAGTCCCAGTCGCTAAACATCCACATGA 62635 Query 20730 AGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCA 20789 || | |||| ||| ||| | | |||||||| | |||||||| || || | Sbjct 62634 AGGAGCCGACGATGGGCAAGATCACGTCCATGCACTTCACCGGCTGGCGTCTAGGACTTA 62575 Query 20790 AGACGGGCATGTACTATCTGCGGACC 20815 |||| ||||||||||| || || ||| Sbjct 62574 AGACTGGCATGTACTACCTCCGCACC 62549 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGC-CT 78565 |||||||||||||||| || || |||||||||| | ||||||||||| ||||| || Sbjct 62870 GAACTCGCCGGCCAGGACACGACGAGAGTAGATGTTGCTGGTGTACGGCTC-AAAGCACT 62928 Query 78566 CGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAAT 78625 | ||| |||||||||||| | || || || ||||| || ||||| || ||||| | Sbjct 62929 CATTGAACCCCATGATCTGCGATGTGCTTGCTGTGGGCATAGGCGCGACGAGCAGAGAGT 62988 Query 78626 TCCGAAGACCATGC 78639 | || | |||||| Sbjct 62989 TGCGGACGCCATGC 63002 >seq1 Length=3303888 Score = 132 bits (146), Expect = 5e-26 Identities = 299/444 (67%), Gaps = 14/444 (3%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 |||||||| || |||||| || || || || ||||||||||| |||||| ||||| Sbjct 494395 CGTCTCATTGCCTTTGCAGCTGTCGAGGGCATTTTCTTCTCTGGTTCGTTCGCCGCTATC 494454 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| ||||| || || ||||| ||||| | |||||||||||||| |||||| Sbjct 494455 TTCTGGCTCAAGAAGCGCGGGCTGATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCC 494514 Query 60102 CGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCTATTGGAAAAA 60161 || ||||||||| | || || || || | ||| | | ||| | | | || | Sbjct 494515 CGTGACGAGGGCATGCACACCGACTTCGCCTGTATGCTGCA--CGCACATCTCCGCAACA 494572 Query 60162 TGCC--CTTCCAAGGATATTCACAAGATTGTTCAGTGGGCTTGTGAAGTGGAGAGCGAGT 60219 ||| | | | | | ||| |||| | | ||| || | ||| |||| Sbjct 494573 AGCCATCACTCGACCTTGTCCACCAGATCATCACGGAAGCTGTCGAGATCGAGCAAGAGT 494632 Query 60220 TCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGT 60279 || || |||| || || || ||| ||| | || ||| |||| ||| |||| Sbjct 494633 TCCTCTCAGACGCCCTACCCTGCGCACTTCTCGGCATGAACGCCAAGCTCATGTGCCAGT 494692 Query 60280 ACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAGGACCAATT--TA 60334 |||| |||| ||||| |||||| ||| | || | | || | || ||| | || Sbjct 494693 ACATCGAGTTCGTCGCTGACCGCCTACTCCTCGCAC---TCGGCCACGG--CAAGTACTA 494747 Query 60335 CGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTT 60394 | || | ||||| ||||||| ||||||| |||||| | | || ||||| ||||| Sbjct 494748 CAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGCCGGCAAGACGAACTT 494807 Query 60395 CTTTGAGAAGCGGGTCGGGGATTA 60418 ||| |||||||| || || || || Sbjct 494808 CTTCGAGAAGCGCGTAGGTGACTA 494831 Score = 125 bits (138), Expect = 8e-24 Identities = 107/132 (81%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 |||||||| ||||| ||| || || || ||||||||||||||||| ||| || || Sbjct 528762 CGTCTCATCGCTTTCGCAGCTGTCGAGGGTATCTTCTTCTCTGGCTCATTCGCCGCCATC 528821 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 |||||||| || ||||| || |||||||| ||||| | |||||||||||||| || ||| Sbjct 528822 TTCTGGCTGAAGAAGCGCGGGCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCTCC 528881 Query 60102 CGGGACGAGGGC 60113 || ||||||||| Sbjct 528882 CGTGACGAGGGC 528893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523209278080