Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 1e-12 >seq2 Length=2712501 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| || ||| |||||| || ||||| || || || || || || Sbjct 1305388 AGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 1305329 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || || ||||| ||||| || || | |||||| Sbjct 1305328 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCC 1305269 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | || ||||| ||||||||| || | ||| Sbjct 1305268 TTGTCTTGGATC-TTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGT 1305210 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAA 34697 || || || ||||| || ||||| || || Sbjct 1305209 GATGGTCTTGCCGGTCAAGGTTTTGACGAA 1305180 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| || ||| |||||| || ||||| || || || || || || Sbjct 1361515 AGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 1361456 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || || ||||| ||||| || || | |||||| Sbjct 1361455 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCC 1361396 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | || ||||| ||||||||| || | ||| Sbjct 1361395 TTGTCTTGGATC-TTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGT 1361337 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAA 34697 || || || ||||| || ||||| || || Sbjct 1361336 GATGGTCTTGCCGGTCAAGGTTTTGACGAA 1361307 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| || ||| |||||| || ||||| || || || || || || Sbjct 1459040 AGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 1458981 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || || ||||| ||||| || || | |||||| Sbjct 1458980 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCC 1458921 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | || ||||| ||||||||| || | ||| Sbjct 1458920 TTGTCTTGGATC-TTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGT 1458862 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAA 34697 || || || ||||| || ||||| || || Sbjct 1458861 GATGGTCTTGCCGGTCAAGGTTTTGACGAA 1458832 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || ||||| || || |||| || ||||| Sbjct 1305601 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGC 1305542 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || | ||||||||||| || || | ||||||||||| |||||| Sbjct 1305541 TTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTT 1305483 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || | ||| || ||| |||||| || ||||| || || || || || || Sbjct 1333220 AGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 1333161 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || ||||| || || || ||||| ||||| || || | |||||| Sbjct 1333160 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCC 1333101 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || || | || ||||| ||||||||| || | ||| Sbjct 1333100 TTGTCTTGGATC-TTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGT 1333042 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAA 34697 || || || ||||| || || || || || Sbjct 1333041 GATGGTCTTGCCGGTCAAGGTCTTTACGAA 1333012 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || ||||| || || |||| || ||||| Sbjct 1361728 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGC 1361669 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || | ||||||||||| || || | ||||||||||| |||||| Sbjct 1361668 TTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTT 1361610 Score = 84.2 bits (92), Expect = 1e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || ||||| || || |||| || ||||| Sbjct 1459253 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCGAGTTGC 1459194 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || | ||||||||||| || || | ||||||||||| |||||| Sbjct 1459193 TTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGGATCTT 1459135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314728710102056