Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 178 3e-39 seq23 129 1e-24 seq29 107 4e-18 >seq2 Length=2712501 Score = 178 bits (196), Expect = 3e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || || | ||| || | || || Sbjct 1333442 AGGACGAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1333383 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || ||||| || ||||| ||||||| || ||||||||| Sbjct 1333382 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 1333323 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||||||||| ||| ||||||||||| ||||| ||| Sbjct 1333322 TGGATCTTCGACTTGACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 1333263 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| ||||| || || | ||||||| Sbjct 1333262 TTGCCAGTGAGGGTCTTGACGAAGATCTGCATT 1333230 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || |||||||| || || | ||| || | || || Sbjct 1305610 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1305551 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || ||||| |||||||| ||||||| || ||||||||| Sbjct 1305550 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 1305491 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || ||||||||||| ||||| ||| Sbjct 1305490 TGGATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 1305431 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 1305430 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1305399 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || |||||||| || || | ||| || | || || Sbjct 1361737 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1361678 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || ||||| |||||||| ||||||| || ||||||||| Sbjct 1361677 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 1361618 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || ||||||||||| ||||| ||| Sbjct 1361617 TGGATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 1361558 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 1361557 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1361526 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || |||||||| || || | ||| || | || || Sbjct 1459262 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1459203 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||| || ||||| |||||||| ||||||| || ||||||||| Sbjct 1459202 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 1459143 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || ||||||||||| ||||| ||| Sbjct 1459142 TGGATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 1459083 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 1459082 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1459051 Score = 168 bits (186), Expect = 2e-36 Identities = 159/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| |||||||| || |||||||| || || | ||||| | ||||| Sbjct 1333214 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1333155 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| ||||||| || |||||||| Sbjct 1333154 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1333095 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 1333094 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 1333035 Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105 || || || | |||||||| || Sbjct 1333034 TTGCCGGTCAAGGTCTTTACGAA 1333012 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| |||||||| || |||||||| || || | ||||| | ||||| Sbjct 1305382 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1305323 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| ||||||| || |||||||| Sbjct 1305322 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1305263 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 1305262 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 1305203 Query 211083 TTTCCCGT 211090 || || || Sbjct 1305202 TTGCCGGT 1305195 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| |||||||| || |||||||| || || | ||||| | ||||| Sbjct 1361509 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1361450 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| ||||||| || |||||||| Sbjct 1361449 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1361390 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 1361389 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 1361330 Query 211083 TTTCCCGT 211090 || || || Sbjct 1361329 TTGCCGGT 1361322 Score = 159 bits (176), Expect = 8e-34 Identities = 148/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || ||||| |||||||| || |||||||| || || | ||||| | ||||| Sbjct 1459034 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1458975 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| | ||| || ||||| ||||||| || |||||||| Sbjct 1458974 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1458915 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| ||||| || ||||| || ||||| ||| Sbjct 1458914 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 1458855 Query 211083 TTTCCCGT 211090 || || || Sbjct 1458854 TTGCCGGT 1458847 Score = 158 bits (174), Expect = 3e-33 Identities = 172/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || ||| || | ||| || | ||| || || ||||| || |||||||| ||||| | ||| Sbjct 1305851 TCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAA 1305792 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || |||| || || |||| |||||| || |||||||| || || || ||||| || || | Sbjct 1305791 GG-TCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGA 1305733 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 || ||||| ||||| ||||| |||||||| ||||| ||||| || ||| |||| Sbjct 1305732 TACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCT 1305673 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| ||||| ||||| || ||||||||||| || || | ||||| Sbjct 1305672 CGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1305627 Score = 158 bits (174), Expect = 3e-33 Identities = 172/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || ||| || | || || | ||| || || ||||| || |||||||| || || | ||| Sbjct 1333683 TCCACGTAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAA 1333624 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | ||| ||||| |||| |||||| || ||||||||||| || || ||||| || || | Sbjct 1333623 CG-TCCGGCCATCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGGA 1333565 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 || ||||||||||||||||| |||||||| ||||| ||||| || ||| |||| Sbjct 1333564 TACCCTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATCGTGTCGGATGATTCTACCT 1333505 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| ||||| ||||| || ||||||||||| || || | ||||| Sbjct 1333504 CGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 1333459 Score = 158 bits (174), Expect = 3e-33 Identities = 172/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || ||| || | ||| || | ||| || || ||||| || |||||||| ||||| | ||| Sbjct 1361978 TCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAA 1361919 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || |||| || || |||| |||||| || |||||||| || || || ||||| || || | Sbjct 1361918 GG-TCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGA 1361860 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 || ||||| ||||| ||||| |||||||| ||||| ||||| || ||| |||| Sbjct 1361859 TACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCT 1361800 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| ||||| ||||| || ||||||||||| || || | ||||| Sbjct 1361799 CGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1361754 Score = 158 bits (174), Expect = 3e-33 Identities = 172/226 (76%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || ||| || | ||| || | ||| || || ||||| || |||||||| ||||| | ||| Sbjct 1459503 TCCACGCAGACGTAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAA 1459444 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || |||| || || |||| |||||| || |||||||| || || || ||||| || || | Sbjct 1459443 GG-TCCTGCCGTCCTCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGA 1459385 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 || ||||| ||||| ||||| |||||||| ||||| ||||| || ||| |||| Sbjct 1459384 TACCCTCCTTATCCTGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCT 1459325 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| ||||| ||||| || ||||||||||| || || | ||||| Sbjct 1459324 CGAGCGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1459279 >seq23 Length=594546 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| ||||| || ||||| ||||| || |||||||| || ||||| || Sbjct 495722 TTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAATC 495781 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| || ||||| || || | ||| ||||||||||||||||| || || || ||| Sbjct 495782 AAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 495841 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || || ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 495842 ATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 495900 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| |||| || ||||| ||||| || |||||||| || ||||| || Sbjct 438877 TTCTGGATGTTGTAATTACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAATC 438936 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | ||| || ||||| || || | ||| ||||||||||||||||| || || || ||| Sbjct 438937 AAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 438996 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| || || ||||| || ||||| ||||| |||||||| ||||| || || Sbjct 438997 ATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAA 439055 >seq29 Length=482220 Score = 107 bits (118), Expect = 4e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | |||||| ||||||||||| ||||| || ||||| || || || | |||||| Sbjct 360707 ACGGAGGCGTAGGACCAGGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGAAAGGGT 360648 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| | ||| || |||||||| || | || Sbjct 360647 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACC 360588 Query 211013 TTCCTTGTC 211021 |||||||| Sbjct 360587 CTCCTTGTC 360579 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||||||||| ||||| || |||||||| || || | |||||| | || || Sbjct 457302 AGGACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCC 457243 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| | ||| || |||||||| || | || |||||||| Sbjct 457242 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 457184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159148554420680