Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045.
2_202017-04-03] 232 sequences; 44,765,267 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq2 145 2e-29
seq23 107 5e-18
>seq2
Length=2712501
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || || ||||| || || |||| ||||| |||| | || | |||||
Sbjct 1305382 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1305323
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| || ||||| || |||||||||
Sbjct 1305322 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1305263
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| ||| | ||||| || | ||||| |||
Sbjct 1305262 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 1305203
Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704
||||| ||||| ||||| | |||
Sbjct 1305202 TTGCCGGTCAAGGTTTTGACGAA 1305180
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || || ||||| || || |||| ||||| |||| | || | |||||
Sbjct 1333214 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1333155
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| || ||||| || |||||||||
Sbjct 1333154 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1333095
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| ||| | ||||| || | ||||| |||
Sbjct 1333094 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 1333035
Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704
||||| ||||| || |||| |||
Sbjct 1333034 TTGCCGGTCAAGGTCTTTACGAA 1333012
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || || ||||| || || |||| ||||| |||| | || | |||||
Sbjct 1361509 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1361450
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| || ||||| || |||||||||
Sbjct 1361449 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1361390
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| ||| | ||||| || | ||||| |||
Sbjct 1361389 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 1361330
Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704
||||| ||||| ||||| | |||
Sbjct 1361329 TTGCCGGTCAAGGTTTTGACGAA 1361307
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| || || || ||||| || || |||| ||||| |||| | || | |||||
Sbjct 1459034 AGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1458975
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | || || ||||| || ||||| || |||||||||
Sbjct 1458974 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 1458915
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| ||| | ||||| || | ||||| |||
Sbjct 1458914 TGGATCTTGCTCTTGACATTGTCGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTC 1458855
Query 225682 TTGCCCGTCAAAGTTTTTATGAA 225704
||||| ||||| ||||| | |||
Sbjct 1458854 TTGCCGGTCAAGGTTTTGACGAA 1458832
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || || || || || |||| ||||||||| ||| || || || ||
Sbjct 1305838 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGCCGTCC 1305779
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||||||||||||||| || || || ||||| || || ||||| ||||| ||
Sbjct 1305778 TCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCC 1305719
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| |||||| ||||| |||||||| | |||||| || | |||||| |||
Sbjct 1305718 TGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTC 1305659
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||| || | ||| | ||||||
Sbjct 1305658 TTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1305627
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || | ||| || || || || || |||| ||||| ||| ||| ||
Sbjct 1333680 ACGTAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGT 1333621
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || | |||||| |||||||||||||| || || ||||| || || |||||
Sbjct 1333620 CCGGCCATCCTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGGATACC 1333561
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| |||||| ||||| ||||| || | ||| || || |
Sbjct 1333560 CTCCTTGTCCTGGATCTTCGACTTCACGTTGTCGATCGTGTCGGATGATTCTACCTCGAG 1333501
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|||||| |||||||| || | ||| || | ||| | ||||||
Sbjct 1333500 CGTGATGGTCTTGCCTGTGAGAGTCTTGACGAAGATTTGCAT 1333459
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || || || || || |||| ||||||||| ||| || || || ||
Sbjct 1361965 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGCCGTCC 1361906
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||||||||||||||| || || || ||||| || || ||||| ||||| ||
Sbjct 1361905 TCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCC 1361846
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| |||||| ||||| |||||||| | |||||| || | |||||| |||
Sbjct 1361845 TGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTC 1361786
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||| || | ||| | ||||||
Sbjct 1361785 TTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1361754
Score = 143 bits (158), Expect = 6e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || | ||| || || || || || |||| ||||||||| ||| || || || ||
Sbjct 1459490 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGCCGTCC 1459431
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| | |||||||||||||||||| || || || ||||| || || ||||| ||||| ||
Sbjct 1459430 TCCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCC 1459371
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| |||||| ||||| |||||||| | |||||| || | |||||| |||
Sbjct 1459370 TGAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTC 1459311
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | ||| || | ||| | ||||||
Sbjct 1459310 TTGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1459279
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||||||||| || || || |||| ||||| |||| | ||| | || ||
Sbjct 1305610 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1305551
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || ||||| || || || |||||||| || ||||| || ||||||||
Sbjct 1305550 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 1305491
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | || || || | ||||| |||
Sbjct 1305490 TGGATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 1305431
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 1305430 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1305399
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||||||||| || || || |||| ||||| |||| | ||| | || ||
Sbjct 1361737 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1361678
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || ||||| || || || |||||||| || ||||| || ||||||||
Sbjct 1361677 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 1361618
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | || || || | ||||| |||
Sbjct 1361617 TGGATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 1361558
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 1361557 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1361526
Score = 131 bits (144), Expect = 4e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| ||||||||||| || || || |||| ||||| |||| | ||| | || ||
Sbjct 1459262 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1459203
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || ||||| || || || |||||||| || ||||| || ||||||||
Sbjct 1459202 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCC 1459143
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| ||| ||||||||||| || | || || || | ||||| |||
Sbjct 1459142 TGGATCTTCGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 1459083
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| || | || || | ||| | |||||
Sbjct 1459082 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1459051
Score = 123 bits (136), Expect = 6e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
||||| |||||||| || || || || |||| ||||| |||| | ||| | || ||
Sbjct 1333442 AGGACGAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCC 1333383
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| || ||||| || ||||| || || || || ||||| || ||||| || ||||||||
Sbjct 1333382 TCGAGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 1333323
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || ||||||||||| |||| || || || | ||||| |||
Sbjct 1333322 TGGATCTTCGACTTGACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTC 1333263
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| || | || || | ||| | ||||||
Sbjct 1333262 TTGCCAGTGAGGGTCTTGACGAAGATCTGCATT 1333230
>seq23
Length=594546
Score = 107 bits (118), Expect = 5e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| |||||||| || || || ||||| || |||||||| || ||||| ||
Sbjct 495722 TTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAATC 495781
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| || || ||||| ||||| || || |||||||| |||||||| ||| ||| |||
Sbjct 495782 AAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 495841
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||||| || | ||||| || | ||||| |||||||||||
Sbjct 495842 ATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 495885
Score = 102 bits (112), Expect = 2e-16
Identities = 121/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585
|| |||| ||||||| || || || ||||| || |||||||| || ||||| ||
Sbjct 438877 TTCTGGATGTTGTAATTACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAATC 438936
Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645
| || || ||||| ||||| || || |||||||| |||||||| ||| ||| |||
Sbjct 438937 AAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG 438996
Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
|| ||||| || | ||||| || | ||||| |||||||||||
Sbjct 438997 ATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGT 439040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192527655201008
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |