Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 134 2e-26 >seq1 Length=3303888 Score = 134 bits (148), Expect = 2e-26 Identities = 342/518 (66%), Gaps = 12/518 (2%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || ||||| |||||||| || || || || |||||||| || || || ||| Sbjct 494504 TCGTTGGAGAAGGTGAGGCCGGGCATCAGCCCGCGCTTCTTGAGCCAGAAGATAGCGGCG 494445 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || ||||| ||||| ||||| || || || ||||| || | || | ||| | Sbjct 494444 AACGAACCAGAGAAGAAAATGCCCTCGACAGCTGCAAAGGCAATGAGACGGCAGCCGAAG 494385 Query 48303 CTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGC 48359 | | | ||| || |||||| | ||||||| | |||||||| | || || Sbjct 494384 GTCGATGCGTCGTCGCTGATCCACTTTAGTGCCCAGTTGGCCTTCTTGCGGATGCACGGG 494325 Query 48360 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTT---TAACGTAAGTA 48416 || | || || || |||||||| || | | | || | || | | ||| || Sbjct 494324 ATGTTGTCGATGGCGTTAAAGAG---GTATGTGCGTTGGCGAGGTTCGCTGATGTAGGTG 494268 Query 48417 TCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAA 48476 || || | || || | |||||||| ||||| || || ||||| || ||||| Sbjct 494267 TCGATGAGTAGTGAGTAGGTCTCGGAGTGGATATTCTCCATCATGATCTGGAAGCCGTAG 494208 Query 48477 AAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTT 48536 || || | || || | ||| || ||||| || ||||| || ||| ||||| || Sbjct 494207 AAGCAGCGAGCCTCAGGGATTTGCACCTCGCCACTGAATCGCTCGACCAGGTTCTCGTTG 494148 Query 48537 ACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTG 48596 || || || || || || || || || | |||||| ||| || || |||| Sbjct 494147 ACGATGCCGTCTGATGCGGCGAAGAAGGCAAGCACATGTGAAATGAAGAATCGCTCGTCA 494088 Query 48597 GAAGTCAGT---TTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTC 48653 | | || || |||||||| | | |||||| || | ||| | || || |||||| Sbjct 494087 TCATTGAGACGCTTGTTCCAGTCGTGCAGATCTTTCGACAGATCAATCTCCTCTGCTGTC 494028 Query 48654 CAAAATGATGCCTCTGCTTTTTTATACATATTCCATAT 48691 || |||||||||||||| || || ||||| | |||||| Sbjct 494027 CAGAATGATGCCTCTGCCTTCTTGTACATCTGCCATAT 493990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694666785460480