Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2 143 2e-29 seq23 105 5e-18 seq29 93.3 3e-14 >seq2 Length=2712501 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGT 44186 ||||| ||| ||||| |||||| ||||||||||||||| | || | || |||| | Sbjct 1305836 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGC-CGTCCT 1305778 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| ||||||||| || ||||| | ||||||||| |||| || | ||| ||||| ||| Sbjct 1305777 CCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCT 1305718 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||||| | | || ||||| | ||||||||||| | ||| || |||| Sbjct 1305717 GAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCT 1305658 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| ||||| ||||| |||||||| Sbjct 1305657 TGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1305627 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGT 44186 ||||| ||| ||||| |||||| ||||||||||||||| | || | || |||| | Sbjct 1361963 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGC-CGTCCT 1361905 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| ||||||||| || ||||| | ||||||||| |||| || | ||| ||||| ||| Sbjct 1361904 CCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCT 1361845 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||||| | | || ||||| | ||||||||||| | ||| || |||| Sbjct 1361844 GAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCT 1361785 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| ||||| ||||| |||||||| Sbjct 1361784 TGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1361754 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGT 44186 ||||| ||| ||||| |||||| ||||||||||||||| | || | || |||| | Sbjct 1459488 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGCTCAAGGTCCTGC-CGTCCT 1459430 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| ||||||||| || ||||| | ||||||||| |||| || | ||| ||||| ||| Sbjct 1459429 CCAACTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCTGGTGGGATACCCTCCTTATCCT 1459370 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||||| | | || ||||| | ||||||||||| | ||| || |||| Sbjct 1459369 GAATCTTCGACTTCACGTTGTCGATCGTGTCTGATGATTCCACCTCGAGCGTGATGGTCT 1459310 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||| ||||| ||||| |||||||| Sbjct 1459309 TGCCTGTGAGAGTCTTGACGAAAATTTGCAT 1459279 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| ||||| |||||| ||||||||||| |||| || ||| |||| || Sbjct 1333439 ACGAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCG 1333380 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| || || | |||||||| |||| ||| | || ||||| ||| Sbjct 1333379 AGTTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTGG 1333320 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | |||||||||| ||| || ||||| | || || ||||| Sbjct 1333319 ATCTTCGACTTGACGTTGTCGATGGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTG 1333260 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||| ||||| Sbjct 1333259 CCAGTGAGGGTCTTGACGAAGATCTGCAT 1333231 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||| ||| ||||| |||||| ||||||||||| ||| | || | || Sbjct 1333671 CAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTCAACGTCCGGCCATC 1333612 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||| |||||| || || ||||| | ||||||||| |||| || | ||| ||||| || Sbjct 1333611 CTCCAACTGCTTACCAGCGAAGATAAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTC 1333552 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | |||||| ||||| | | || ||||||| ||||| ||||| | ||| || || Sbjct 1333551 CTGGATCTTCGACTTCACGTTGTCGATCGTGTCGGATGATTCTACCTCGAGCGTGATGGT 1333492 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || ||||| ||||| ||||||||||||||| Sbjct 1333491 CTTGCCTGTGAGAGTCTTGACGAAGATTTGCATG 1333458 Score = 125 bits (138), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| || | ||| | | || || ||||| ||| |||||| ||||||||||| || Sbjct 1333233 CATTCCACCACGCAGACGGAGGACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTC 1333174 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| ||| | || || |||||||| ||||| |||||||| |||||||| |||| Sbjct 1333173 GGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGG 1333114 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGAT 44284 ||| | || ||||| || ||||| ||| || ||| | |||||||||| | Sbjct 1333113 AGGAATGCCCTCCTTGTCTTGGATCTTGCTCTTGACATTGT--CGATGGTGTCGGAGCTC 1333056 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 |||||||| | || || ||||| || || | |||||| |||||| Sbjct 1333055 TCCACCTCAAGGGTGATGGTCTTGCCGGTCAAGGTCTTTACGAAG 1333011 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| || ||| |||| || Sbjct 1305607 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCG 1305548 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| || || | ||||| || |||| ||| | || ||||| ||| Sbjct 1305547 AGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGG 1305488 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||||| || || ||||| | || || |||| Sbjct 1305487 ATCTTCGACTTGACATTGT--CGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCT 1305430 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||||||| |||||||| ||||| Sbjct 1305429 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1305399 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| || ||| |||| || Sbjct 1361734 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCG 1361675 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| || || | ||||| || |||| ||| | || ||||| ||| Sbjct 1361674 AGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGG 1361615 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||||| || || ||||| | || || |||| Sbjct 1361614 ATCTTCGACTTGACATTGT--CGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCT 1361557 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||||||| |||||||| ||||| Sbjct 1361556 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1361526 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| |||| || ||| |||| || Sbjct 1459259 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGGCCGTCCTCG 1459200 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| || || | ||||| || |||| ||| | || ||||| ||| Sbjct 1459199 AGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCTGGAGGAATGCCCTCCTTGTCCTGG 1459140 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||||| || || ||||| | || || |||| Sbjct 1459139 ATCTTCGACTTGACATTGT--CGATGGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCT 1459082 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||||||| |||||||| ||||| Sbjct 1459081 TGCCGGTGAGGGTCTTGACGAAGATCTGCAT 1459051 Score = 118 bits (130), Expect = 8e-22 Identities = 149/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||| ||||||||||| |||| ||| ||| | || || Sbjct 1305379 ACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 1305320 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| |||||||| |||||||| |||| ||| | || ||||| || Sbjct 1305319 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGG 1305260 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||||| | |||||||| | || || |||| Sbjct 1305259 ATCTTGCTCTTGACATTGT--CGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCT 1305202 Query 44307 TTCCCGTGAGGGTCTTCACGAAG 44329 | || || | ||| || |||||| Sbjct 1305201 TGCCGGTCAAGGTTTTGACGAAG 1305179 Score = 118 bits (130), Expect = 8e-22 Identities = 149/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||| ||||||||||| |||| ||| ||| | || || Sbjct 1361506 ACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 1361447 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| |||||||| |||||||| |||| ||| | || ||||| || Sbjct 1361446 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGG 1361387 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||||| | |||||||| | || || |||| Sbjct 1361386 ATCTTGCTCTTGACATTGT--CGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCT 1361329 Query 44307 TTCCCGTGAGGGTCTTCACGAAG 44329 | || || | ||| || |||||| Sbjct 1361328 TGCCGGTCAAGGTTTTGACGAAG 1361306 Score = 118 bits (130), Expect = 8e-22 Identities = 149/203 (73%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||| ||||||||||| |||| ||| ||| | || || Sbjct 1459031 ACGAGATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 1458972 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| |||||||| |||||||| |||| ||| | || ||||| || Sbjct 1458971 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCTTGG 1458912 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | |||||||||| | |||||||| | || || |||| Sbjct 1458911 ATCTTGCTCTTGACATTGT--CGATGGTGTCGGAGCTCTCCACCTCAAGGGTGATGGTCT 1458854 Query 44307 TTCCCGTGAGGGTCTTCACGAAG 44329 | || || | ||| || |||||| Sbjct 1458853 TGCCGGTCAAGGTTTTGACGAAG 1458831 >seq23 Length=594546 Score = 105 bits (116), Expect = 5e-18 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| |||||||||||||| ||| | | || || |||||||| ||||| || | Sbjct 495720 CCTTCTGGATGTTGTAATCACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 495779 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| |||| || | || ||||| ||| ||||| ||| || ||| Sbjct 495780 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 495839 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| || |||||||| | || || ||||| |||||||||||||| || Sbjct 495840 --CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 495897 Query 44326 GAAG 44329 |||| Sbjct 495898 GAAG 495901 Score = 102 bits (112), Expect = 6e-17 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||||| ||| | | || || |||||||| ||||| || | Sbjct 438875 CCTTCTGGATGTTGTAATTACTCAGTGTCCTGCCATCCTCAAGCTGCTTTCCGGCGAAAA 438934 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 |||| |||||||| |||| || | || ||||| ||| ||||| ||| || ||| Sbjct 438935 TCAAGCGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGT 438994 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||||| || |||||||| | || || ||||| |||||||||||||| || Sbjct 438995 --CGATCGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGAC 439052 Query 44326 GAAG 44329 |||| Sbjct 439053 GAAG 439056 >seq29 Length=482220 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || |||||| ||||||||||| |||| || ||| |||| || Sbjct 457299 ACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCGTCCTCG 457240 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||||||| ||||| |||||||| |||||||| || | || | ||| ||||| || Sbjct 457239 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 457184 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || |||||| ||||| ||||| |||| || ||| |||| || Sbjct 360694 ACCAGGTGAAGAGTCGACTCCTTCTGGATATTGTAGTCGGAAAGGGTGCGGCCGTCCTCG 360635 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||||||| ||||| |||||||| |||||||| || | || | ||| ||||| || Sbjct 360634 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 360579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989382127144