Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rachicladosporium_20sp._20CCFEE_205018_20[genbank_20GCA_5F002077045. 2_202017-04-03] 232 sequences; 44,765,267 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 163 7e-35 seq23 134 3e-26 >seq2 Length=2712501 Score = 163 bits (180), Expect = 7e-35 Identities = 162/206 (79%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||||||||| || || ||||| |||||||||||| |||||| Sbjct 1305630 CAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCAGAC 1305689 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||| || || || ||||| || |||||||| Sbjct 1305690 ACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAG 1305749 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||| || || ||| | || || || ||||| |||| |||||| ||| | Sbjct 1305750 CGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGAC-CTTGAGCGATTACAACAT 1305808 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || || || ||||| |||| Sbjct 1305809 CCAGAAGGAGTCGACGCTGCA-CTTG 1305833 Score = 163 bits (180), Expect = 7e-35 Identities = 162/206 (79%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||||||||| || || ||||| |||||||||||| |||||| Sbjct 1361757 CAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCAGAC 1361816 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||| || || || ||||| || |||||||| Sbjct 1361817 ACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAG 1361876 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||| || || ||| | || || || ||||| |||| |||||| ||| | Sbjct 1361877 CGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGAC-CTTGAGCGATTACAACAT 1361935 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || || || ||||| |||| Sbjct 1361936 CCAGAAGGAGTCGACGCTGCA-CTTG 1361960 Score = 163 bits (180), Expect = 7e-35 Identities = 162/206 (79%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||||||||| || || ||||| |||||||||||| |||||| Sbjct 1459282 CAAATTTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTGGAATCATCAGAC 1459341 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||||||||| || || || ||||| || |||||||| Sbjct 1459342 ACGATCGACAACGTGAAGTCGAAGATTCAGGATAAGGAGGGTATCCCACCAGACCAGCAG 1459401 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||| || || ||| | || || || ||||| |||| |||||| ||| | Sbjct 1459402 CGTCTCATCTTCGCTGGGAAGCAGTTGGAGGACGGCAGGAC-CTTGAGCGATTACAACAT 1459460 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 ||| || || || || ||||| |||| Sbjct 1459461 CCAGAAGGAGTCGACGCTGCA-CTTG 1459485 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || ||| ||| Sbjct 1333234 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGTCCTCCGAC 1333293 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || || ||||| |||||||| Sbjct 1333294 ACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGCAG 1333353 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || || ||||| || || | |||||| |||| || ||| || Sbjct 1333354 CGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAACATC 1333413 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 1333414 CAGAAGGAGTCTACGCTCCACCTCGT 1333439 Score = 149 bits (164), Expect = 2e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| ||||| | || || || || |||||||| |||||||| ||||| ||||||||| Sbjct 1305180 TTCGTCAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 1305239 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| || ||||| || || || ||||| |||||||| || | Sbjct 1305240 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 1305299 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 ||||||||||| || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 1305300 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1305359 Query 178110 GAATCAACACTGCATCTTGT 178129 || || || || ||||| || Sbjct 1305360 GAGTCCACCCTTCATCTCGT 1305379 Score = 149 bits (164), Expect = 2e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| ||||| | || || || || |||||||| |||||||| ||||| ||||||||| Sbjct 1361307 TTCGTCAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 1361366 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| || ||||| || || || ||||| |||||||| || | Sbjct 1361367 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 1361426 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 ||||||||||| || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 1361427 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1361486 Query 178110 GAATCAACACTGCATCTTGT 178129 || || || || ||||| || Sbjct 1361487 GAGTCCACCCTTCATCTCGT 1361506 Score = 149 bits (164), Expect = 2e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| ||||| | || || || || |||||||| |||||||| ||||| ||||||||| Sbjct 1458832 TTCGTCAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 1458891 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| || ||||| || || || ||||| |||||||| || | Sbjct 1458892 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 1458951 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 ||||||||||| || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 1458952 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1459011 Query 178110 GAATCAACACTGCATCTTGT 178129 || || || || ||||| || Sbjct 1459012 GAGTCCACCCTTCATCTCGT 1459031 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || | || || || || |||||||| |||||||| ||||| ||||||||| Sbjct 1333012 TTCGTAAAGACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATC 1333071 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| || ||||| || || || ||||| |||||||| || | Sbjct 1333072 GACAATGTCAAGAGCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCTTG 1333131 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109 ||||||||||| || |||||||| ||||| | || || |||| || ||| |||| || Sbjct 1333132 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAAG 1333191 Query 178110 GAATCAACACTGCATCTTGT 178129 || || || || ||||| || Sbjct 1333192 GAGTCCACCCTTCATCTCGT 1333211 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||||||||| || || ||||| |||||||| ||| || ||| Sbjct 1333462 CAAATCTTCGTCAAGACTCTCACAGGCAAGACCATCACGCTCGAGGTAGAATCATCCGAC 1333521 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| |||||||| || || ||||| || |||||||| Sbjct 1333522 ACGATCGACAACGTGAAGTCGAAGATCCAGGACAAGGAGGGTATCCCACCAGACCAGCAG 1333581 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||| | || ||||| |||| | ||| || ||| || Sbjct 1333582 CGTCTTATCTTCGCTGGTAAGCAGTTGGAGGATGGCCGGACGTTGAGCGACTACAACATC 1333641 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || ||||| |||| Sbjct 1333642 CAGAAGGAGTCGACGCTGCA-CTTG 1333665 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 1305402 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 1305461 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || || ||||| ||||| || Sbjct 1305462 ACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAACAG 1305521 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || || ||||| || || | |||||| |||| || ||| || Sbjct 1305522 CGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAACATC 1305581 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 1305582 CAGAAGGAGTCGACTCTCCACCTCGT 1305607 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 1361529 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 1361588 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || || ||||| ||||| || Sbjct 1361589 ACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAACAG 1361648 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || || ||||| || || | |||||| |||| || ||| || Sbjct 1361649 CGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAACATC 1361708 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 1361709 CAGAAGGAGTCGACTCTCCACCTCGT 1361734 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || |||||||||||||| || || ||| Sbjct 1459054 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 1459113 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || ||||| ||||| |||||||| || || || ||||| ||||| || Sbjct 1459114 ACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAACAG 1459173 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || || ||||| || || | |||||| |||| || ||| || Sbjct 1459174 CGCCTCATTTTCGCCGGCAAGCAACTCGAGGACGGCCGCACTCTTTCCGACTACAACATC 1459233 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 1459234 CAGAAGGAGTCGACTCTCCACCTCGT 1459259 >seq23 Length=594546 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||| |||||||| || ||||| ||| Sbjct 495900 TTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACGATC 495841 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || |||||||| || |||||||| || | Sbjct 495840 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAGCAGCGCTTG 495781 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || ||||||||||| ||||| || ||||| ||||| || ||||| ||| |||| || Sbjct 495780 ATTTTCGCCGGAAAGCAGCTTGAGGATGGCAGGACACTGAGTGATTACAACATCCAGAA 495722 Score = 129 bits (142), Expect = 1e-24 Identities = 136/179 (76%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || |||||||| |||||||| || ||||| ||| Sbjct 439055 TTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACGATC 438996 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| ||||| |||||||| || |||||||| || |||||||| || | Sbjct 438995 GACAATGTCAAGAGCAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAGCAGCGCTTG 438936 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || ||||||||||| ||||| || ||||| ||||| || |||| ||| |||| || Sbjct 438935 ATTTTCGCCGGAAAGCAGCTTGAGGATGGCAGGACACTGAGTAATTACAACATCCAGAA 438877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203727621909008