Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq1 113 1e-19
>seq1
Length=5014741
Score = 113 bits (124), Expect = 1e-19
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505
||| | ||||||||||| || ||| |||||||| || ||||| |||||||| |
Sbjct 1638687 CTTCTGGGCATGAACGCCACCCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTG 1638746
Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565
| || || || || |||| || || ||| ||| | || ||||||| |||||||||
Sbjct 1638747 CTGGTCGCTCTCGGCAACGACAAGGTCTACCGCTCCACCAATCCCTTTGACTTTATGGAG 1638806
Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625
||| || || || ||||||||||||||||| ||||| ||| | ||||| |||| |
Sbjct 1638807 AACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAG 1638866
Query 230626 CCTGGTGTGATG 230637
| ||||| |||
Sbjct 1638867 GCCGGTGTCATG 1638878
Score = 89.7 bits (98), Expect = 1e-12
Identities = 246/369 (67%), Gaps = 6/369 (2%)
Strand=Plus/Minus
Query 282393 ACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAATTTCTAGGAGACTGGGAAAACAG 282452
|||| || |||||||| | || ||||| | || || | || ||| |||||| |
Sbjct 3459060 ACGACGGGCGTGATGAATTCCTGGAAGAACTCAGGGATGGCCAGCAGAGAGGGAAACTGG 3459001
Query 282453 CTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 282512
| |||||||| |||| |||||| || ||| | ||||| |||| |||| |
Sbjct 3459000 ACTTCCAAAAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGGCC 3458941
Query 282513 ATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACA-CTTTACCGGTTTG 282571
|||||||||| |||||| || | ||| ||||| |||||| || | | ||
Sbjct 3458940 ATGATCATCAAATGACCATACCGCAGGCTCTTGGTGTCGGTGTACACCTGTTTGTGCTTC 3458881
Query 282572 AAGGCCCAAAATTTGTTTGA-GCGCGGTGATTTCTTCGTTCTTTGTGATACTTG-CCACA 282629
|| |||||||| || |||| | | | ||| || | |||||| ||||| || | | |
Sbjct 3458880 AA-GCCCAAAAACTGCTTGATGTTCTG-GATCTCCTTGTTCTTCGTGAT-CTGGTCGATG 3458824
Query 282630 GATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCTCGCGA 282689
|| |||||||| || |||| | ||||| || || || || |||||| | ||| |
Sbjct 3458823 GAGGCATCGCGCACATTCAAAAGTTTACCACGCAGCGGGAACACACCAATGCGGTCGGGG 3458764
Query 282690 CCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCCTCCGTCAAGATG 282749
||| ||||| | || |||| || || ||||| || |||||||||| |||
Sbjct 3458763 TCGAGCACGGCACGGCCAGCAACAGCCAGACCACGGGCGGAGTCACCCTCCGTCAGGATC 3458704
Query 282750 AGAGTACAC 282758
|| || |||
Sbjct 3458703 AGCGTGCAC 3458695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057823647612380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |