Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1 113 1e-19 >seq1 Length=5014741 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 ||| | ||||||||||| || ||| |||||||| || ||||| |||||||| | Sbjct 1638687 CTTCTGGGCATGAACGCCACCCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTG 1638746 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || || || |||| || || ||| ||| | || ||||||| ||||||||| Sbjct 1638747 CTGGTCGCTCTCGGCAACGACAAGGTCTACCGCTCCACCAATCCCTTTGACTTTATGGAG 1638806 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 ||| || || || ||||||||||||||||| ||||| ||| | ||||| |||| | Sbjct 1638807 AACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAG 1638866 Query 230626 CCTGGTGTGATG 230637 | ||||| ||| Sbjct 1638867 GCCGGTGTCATG 1638878 Score = 89.7 bits (98), Expect = 1e-12 Identities = 246/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Minus Query 282393 ACGATAGGTGTGATGAACTTCTTCAAGAAACCTGGAATTTCTAGGAGACTGGGAAAACAG 282452 |||| || |||||||| | || ||||| | || || | || ||| |||||| | Sbjct 3459060 ACGACGGGCGTGATGAATTCCTGGAAGAACTCAGGGATGGCCAGCAGAGAGGGAAACTGG 3459001 Query 282453 CTATGGAAAAAGTTCATGACAAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 282512 | |||||||| |||| |||||| || ||| | ||||| |||| |||| | Sbjct 3459000 ACTTCCAAAAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGGCC 3458941 Query 282513 ATGATCATCACATGACCGTATCTCAGAGAAGAAGTGTCTTTGTACA-CTTTACCGGTTTG 282571 |||||||||| |||||| || | ||| ||||| |||||| || | | || Sbjct 3458940 ATGATCATCAAATGACCATACCGCAGGCTCTTGGTGTCGGTGTACACCTGTTTGTGCTTC 3458881 Query 282572 AAGGCCCAAAATTTGTTTGA-GCGCGGTGATTTCTTCGTTCTTTGTGATACTTG-CCACA 282629 || |||||||| || |||| | | | ||| || | |||||| ||||| || | | | Sbjct 3458880 AA-GCCCAAAAACTGCTTGATGTTCTG-GATCTCCTTGTTCTTCGTGAT-CTGGTCGATG 3458824 Query 282630 GATGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCTCGCGA 282689 || |||||||| || |||| | ||||| || || || || |||||| | ||| | Sbjct 3458823 GAGGCATCGCGCACATTCAAAAGTTTACCACGCAGCGGGAACACACCAATGCGGTCGGGG 3458764 Query 282690 CCGACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCCTCCGTCAAGATG 282749 ||| ||||| | || |||| || || ||||| || |||||||||| ||| Sbjct 3458763 TCGAGCACGGCACGGCCAGCAACAGCCAGACCACGGGCGGAGTCACCCTCCGTCAGGATC 3458704 Query 282750 AGAGTACAC 282758 || || ||| Sbjct 3458703 AGCGTGCAC 3458695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823647612380