Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 149 7e-31 >seq2 Length=4288194 Score = 149 bits (164), Expect = 7e-31 Identities = 452/684 (66%), Gaps = 22/684 (3%) Strand=Plus/Minus Query 53987 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 54046 || |||| || ||||||| || |||||| |||| || ||| || ||||| || ||| Sbjct 3316496 CACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGA 3316437 Query 54047 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 54106 || || ||||| ||||| | || ||||| | || | ||||| || || ||| Sbjct 3316436 TCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTC 3316377 Query 54107 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATA 54166 || || || |||||| | | | ||| | |||||||| |||||||| ||| || | Sbjct 3316376 TTCCGCAGGTCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATG--CAGA 3316319 Query 54167 A--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 54224 | | || || || ||||| || ||||| || | ||| | || ||||| ||| | || | Sbjct 3316318 AGGCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACAC 3316259 Query 54225 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 54284 | ||| || || || || ||||||| || ||||| |||| || ||| || ||| Sbjct 3316258 GAAGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGG 3316199 Query 54285 CACGAATAT--TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 | ||||| | ||| | |||| || || || ||| | || ||||| | || || Sbjct 3316198 CGCGAATGCGGTGGACATTCA--GACCGATGCCACCGGCCGTCTTGGAGATCATGGCACA 3316141 Query 54343 TCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 54401 ||| || | ||| || ||||||||||| || || || ||| |||||| | || || | Sbjct 3316140 -CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAGC 3316082 Query 54402 AGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 || ||||| | ||| | || || || || || || | || || || ||||| Sbjct 3316081 AGGAAGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGT 3316026 Query 54458 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCATT 54515 || || | || | || | |||| ||||| ||||||| | | || | ||| || Sbjct 3316025 GTGAAGAACTTGTTGGACATGTAG-TTGTATGTCTCGACAACGCGCTCCACATCGTCACC 3315967 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 | || || || || |||||||| | ||||||||| || | || || ||||| || Sbjct 3315966 CCAG-ATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGACAATCTTACCGT 3315908 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | || || | |||||| |||| || || || ||||| || | ||| |||| Sbjct 3315907 CGAGCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGT 3315848 Query 54636 CTCGTTCGTAAATAATAACTGAGT 54659 | || ||||| | ||| | |||| Sbjct 3315847 CGCGGTCGTAGACAATGGCCGAGT 3315824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721407040480