Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 212 6e-50 seq10 149 6e-31 seq2 147 2e-30 seq3 136 4e-27 >seq1 Length=5014741 Score = 212 bits (234), Expect = 6e-50 Identities = 323/455 (71%), Gaps = 4/455 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||||||||| ||||||||||| ||| || ||| || |||| | |||||| Sbjct 1638367 AGAAGGCCGAGTGGGCCCTGCGCTGGATTTCCGACAAGGAGTCCACCTTTGCGCAGCGCC 1638426 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | ||||| || || |||||||||||| | ||||| ||| ||| | |||| || | Sbjct 1638427 TCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCTTCTCGTCCATCTTCT 1638486 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| || ||||| ||||| || ||||||||| ||| ||||| || ||| | | Sbjct 1638487 GGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATTTCCCGCG 1638546 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||| ||||| |||||||||||| |||||||| || || | || |||| Sbjct 1638547 ACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCTCCCACCTGAACAACCGCCCGA 1638606 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | | || ||| || || ||| || ||| || |||||| || | | Sbjct 1638607 GCAAGCAGATCATCCAGGACATTATCGTCGATGCCGTCAAGATTGAGCAGGAGTTTTTGA 1638666 Query 117282 CCGAAGCGCTG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 |||| || ||| || |||| ||| ||||| | || || | | ||| ||| ||||| Sbjct 1638667 CCGAGGCCCTGCCCTGTGC-TCTTCTGGGCATGAA-CGCCACCCTCATGAAGCAGTACAT 1638724 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 |||||||| |||||| | |||||| ||| || | | || |||| |||| | | | Sbjct 1638725 TGAGTTCGTTGCCGACCGTCTGCTGGTCGCTCTCGGCAACGACAAGGTCTACCGCTCCAC 1638784 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 ||| || | ||||||||| | ||||||| ||| Sbjct 1638785 CAATCCCTTTGACTTTATGGAGAACATCTCCCTGG 1638819 Score = 210 bits (232), Expect = 2e-49 Identities = 220/286 (77%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| |||||| || |||||||| | ||||||| | |||||| Sbjct 1637953 ATCTGGCAAATGTACAAGAAGCACGAGGCTTCTTTCTGGACGGCCGAGGAGATTGACCTG 1638012 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||||||| | ||| |||||||| |||||||| |||||| Sbjct 1638013 TCCAAGGACCTGCACGACTGGCACAACCGCCTGAACGACGACGAGCGCTTCTTCATCTCC 1638072 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| ||||||||| || ||||||||||||||||| || |||||||| Sbjct 1638073 CACATCCTCGCCTTCTTCGCCGCCTCGGATGGCATCGTCAACGAGAACCTCGTCGAGCGC 1638132 Query 116813 TTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| || | ||||| |||||| ||||||| || ||||| |||||||| |||||| || Sbjct 1638133 TTCAGCGC-CGAGGTCCAGGTGCCCGAGGCCCGCTGCTTTTACGGCTTCCAGATCATGAT 1638191 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 ||||||| | ||||| || | || || ||||| ||||| ||| Sbjct 1638192 GGAGAACATTCACTCCGAGACCTACTCTCTGCTCATTGACACCTAC 1638237 >seq10 Length=919426 Score = 149 bits (164), Expect = 6e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | || Sbjct 645088 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 645147 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||| ||| | |||||| Sbjct 645148 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 645207 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| |||| || ||||| |||||||||| Sbjct 645208 CAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAAC 645267 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||||| || || ||| |||| Sbjct 645268 ATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCG 645302 >seq2 Length=4288194 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| ||||| |||||||| | || ||||| | | Sbjct 328220 ATGCAGATTTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAGGTCGAGTCTTCG 328279 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| |||||||| ||| | ||||| Sbjct 328280 GATACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCA 328338 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 328339 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAA 328398 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 328399 CATCCAGAAGGAATCCACCCTCCACCTGGT 328428 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || ||||| |||||||| |||| ||||| | || Sbjct 328448 ATGCAGATCTTCGTCAAGACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 328507 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || |||| ||||| |||||||| || | |||||| Sbjct 328508 GACACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCAG 328567 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| |||||||| || | ||||||||| ||||||||| Sbjct 328568 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAAC 328627 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | ||||| || || || | ||| || | || ||| Sbjct 328628 ATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGC 328675 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || || || | || || ||| || | Sbjct 329132 ATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACGATTACGCTGGAAGTGGAATCCTCG 329191 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || || | ||||| |||||||| || | ||||| Sbjct 329192 GACACCATTGACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCA 329250 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||||| ||| |||| |||| || || || ||||||||| Sbjct 329251 GCAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTACAA 329310 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || ||||| || ||| |||| | | |||||| Sbjct 329311 CATCCAGAAGGAGTCGACACTGCACCTGGTGCTGCGTCTTCGTGGCGGC 329359 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | |||||||| || || || | || || || | | Sbjct 328676 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328735 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || || | ||||| ||||||||||| | ||||| Sbjct 328736 GACACGATTGACAACG-TCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCA 328794 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 328795 GCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAA 328854 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | ||||| || || || | ||| || | || ||| Sbjct 328855 CATCCAGAAGGAGTCTACGCTCCACCTGGTTCTCCGCCTGCGTGGTGGC 328903 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | |||||||| || || || | || || || | | Sbjct 328904 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328963 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || || | ||||| ||||||||||| | ||||| Sbjct 328964 GACACGATTGACAACG-TCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCA 329022 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||||| ||| |||| |||| || || || ||||||||| Sbjct 329023 GCAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTACAA 329082 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||||||||| | |||||||| | ||| |||| Sbjct 329083 CATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCG 329118 >seq3 Length=3655701 Score = 136 bits (150), Expect = 4e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| |||| ||||| || | |||| | | Sbjct 2673781 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 2673722 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| ||||||||||| | |||||||| || || Sbjct 2673721 GACAACG-TCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCT 2673663 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| || ||||| ||||| || || | || || || |||||||||||||||||| Sbjct 2673662 GATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGAA 2673603 Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| | || || || || ||| | ||| || | || || Sbjct 2673602 GGAGTCGACCCTCCACCTGGTGCTCCGCCTGCGTGGTGG 2673564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219032553760