Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3 118 9e-22 seq2 118 9e-22 seq10 100 2e-16 >seq3 Length=3655701 Score = 118 bits (130), Expect = 9e-22 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||||| || || |||||||| ||| || || || |||||| Sbjct 2673581 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTC 2673640 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || || |||| || |||||||| || || || |||||||||||||| Sbjct 2673641 GAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 2673700 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||||| | ||||||||||| ||| | || || Sbjct 2673701 GATCTTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTT 2673760 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCA 118737 ||| || || || || || ||| ||||| Sbjct 2673761 GCCCGTGAGGGTCTTCACGAAA--CTGCA 2673787 >seq2 Length=4288194 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || || || || || |||||||| ||| | ||||| ||||| Sbjct 328428 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 328369 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| ||||||||||| ||||| || |||||||||||||| Sbjct 328368 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 328309 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| |||| ||||||||| | || | || ||| Sbjct 328308 ATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTG 328249 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| || || || || |||||||||||| Sbjct 328248 CCGGTGAGCGTCTTGACGAAAATCTGCATG 328219 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || |||||||| || | ||||| |||||| Sbjct 328656 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328597 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || |||||||||||||| | Sbjct 328596 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGA 328537 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||||| | ||||||||||| || | || ||| Sbjct 328536 ATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTG 328477 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || |||||||| Sbjct 328476 CCGGTAAGCGTCTTGACGAAGATCTGCAT 328448 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| || || |||||||| || | ||||| |||||| Sbjct 328884 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328825 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || ||||| |||| || |||||||| || || || ||||||||||||||| Sbjct 328824 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328765 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||||||| ||| ||||| | || | ||| ||| Sbjct 328764 ATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTTG 328705 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || ||||| || |||||| Sbjct 328704 CCCGTCAAGGTCTTGACAAAGATTTGCATG 328675 Score = 107 bits (118), Expect = 2e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 133219 ACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCT-GAGATATACATTCGACGTG 133277 || |||||||||| || ||||||||||| || || || | ||| || | || |||||| Sbjct 3317350 ACGGGTTGACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAG-TAGATGTTGGACGTG 3317292 Query 133278 AACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTAC 133337 | || ||||| | ||||||||||| || ||||||| ||||| |||||| ||||| | Sbjct 3317291 TATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGC 3317232 Query 133338 GCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAG 133397 ||||||| || | ||| | || |||| || || || || | ||| || |||| Sbjct 3317231 GCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAG 3317172 Query 133398 TCCCACAG 133405 |||||||| Sbjct 3317171 TCCCACAG 3317164 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||| | || ||||| || ||||||||||| ||| Sbjct 329132 TACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGG 329073 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || || || | ||| || || || | || || |||||||| || || | Sbjct 329072 ACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCG 329013 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | ||||||||||||||| || || || || | || | ||||||| ||| | Sbjct 329012 GGATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAA 328953 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | || | ||| ||||| |||| || || ||||| || |||||| Sbjct 328952 CCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | ||| ||||| || || |||||||| ||| || || || || Sbjct 329344 CAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTC 329285 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || | ||| || || || | || || |||||||| || || || |||||||||||||| Sbjct 329284 TTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTC 329225 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | || | |||||||| | || || || | || | ||| Sbjct 329224 CTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGT 329165 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||||| || || || ||||||||||| Sbjct 329164 CTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132 >seq10 Length=919426 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||||| || ||| || || |||||||| ||| || || || || Sbjct 645300 CAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTC 645241 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| || |||||||| || || || |||||||||||||| Sbjct 645240 CTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 645181 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| |||||| | ||| ||||| | ||| | || Sbjct 645180 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGT 645121 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| || || || || || || |||||||||| Sbjct 645120 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGG 645086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830262529992