Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq3 118 9e-22
seq2 118 9e-22
seq10 100 2e-16
>seq3
Length=3655701
Score = 118 bits (130), Expect = 9e-22
Identities = 152/209 (73%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||||| || ||||| || || |||||||| ||| || || || ||||||
Sbjct 2673581 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTC 2673640
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||| || || || |||| || |||||||| || || || ||||||||||||||
Sbjct 2673641 GAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 2673700
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| |||||||| | ||||||||||| ||| | || ||
Sbjct 2673701 GATCTTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTT 2673760
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCA 118737
||| || || || || || ||| |||||
Sbjct 2673761 GCCCGTGAGGGTCTTCACGAAA--CTGCA 2673787
>seq2
Length=4288194
Score = 118 bits (130), Expect = 9e-22
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| || || || || || |||||||| ||| | ||||| |||||
Sbjct 328428 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 328369
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || |||||| |||| ||||||||||| ||||| || ||||||||||||||
Sbjct 328368 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 328309
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | ||| |||| ||||||||| | || | || |||
Sbjct 328308 ATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTG 328249
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
||||| || || || || ||||||||||||
Sbjct 328248 CCGGTGAGCGTCTTGACGAAAATCTGCATG 328219
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| |||||||| || || |||||||| || | ||||| ||||||
Sbjct 328656 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328597
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| || |||||||| || || || |||||||||||||| |
Sbjct 328596 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGA 328537
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | |||| ||||| | ||||||||||| || | || |||
Sbjct 328536 ATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTG 328477
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| || || || || || ||||||||
Sbjct 328476 CCGGTAAGCGTCTTGACGAAGATCTGCAT 328448
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||| ||||| |||||||| || || |||||||| || | ||||| ||||||
Sbjct 328884 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328825
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| || |||||||| || || || |||||||||||||||
Sbjct 328824 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328765
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | ||||||| ||| ||||| | || | ||| |||
Sbjct 328764 ATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTTG 328705
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| |||| || || ||||| || ||||||
Sbjct 328704 CCCGTCAAGGTCTTGACAAAGATTTGCATG 328675
Score = 107 bits (118), Expect = 2e-18
Identities = 138/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 133219 ACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCT-GAGATATACATTCGACGTG 133277
|| |||||||||| || ||||||||||| || || || | ||| || | || ||||||
Sbjct 3317350 ACGGGTTGACCACCTGGAACTCGCCGGCCAGCACACGCCGCGAG-TAGATGTTGGACGTG 3317292
Query 133278 AACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTAC 133337
| || ||||| | ||||||||||| || ||||||| ||||| |||||| ||||| |
Sbjct 3317291 TATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGC 3317232
Query 133338 GCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAG 133397
||||||| || | ||| | || |||| || || || || | ||| || ||||
Sbjct 3317231 GCCACCAGCAGACTGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAG 3317172
Query 133398 TCCCACAG 133405
||||||||
Sbjct 3317171 TCCCACAG 3317164
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| || || | | || ||||||||| | || ||||| || ||||||||||| |||
Sbjct 329132 TACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGG 329073
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
|| || || || || | ||| || || || | || || |||||||| || || |
Sbjct 329072 ACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCG 329013
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| ||||||||||||||| || || || || | || | ||||||| ||| |
Sbjct 329012 GGATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCAA 328953
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|||| | || | ||| ||||| |||| || || ||||| || ||||||
Sbjct 328952 CCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| ||| | ||| ||||| || || |||||||| ||| || || || ||
Sbjct 329344 CAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTC 329285
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
|| | ||| || || || | || || |||||||| || || || ||||||||||||||
Sbjct 329284 TTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTC 329225
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | || | |||||||| | || || || | || | |||
Sbjct 329224 CTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGT 329165
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||| ||||| || || || |||||||||||
Sbjct 329164 CTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
>seq10
Length=919426
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585
|| ||||| ||||| || ||| || || |||||||| ||| || || || ||
Sbjct 645300 CAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTC 645241
Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645
||| ||||| || || ||| |||| || |||||||| || || || ||||||||||||||
Sbjct 645240 CTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 645181
Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705
|| || || || | |||| |||||| | ||| ||||| | ||| | ||
Sbjct 645180 CTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGT 645121
Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740
||||| || || || || || || ||||||||||
Sbjct 645120 CTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGG 645086
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830262529992
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