Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq10 131 2e-25
seq2 127 2e-24
seq3 100 3e-16
>seq10
Length=919426
Score = 131 bits (144), Expect = 2e-25
Identities = 158/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| || | ||||||||||| || || ||||| || | ||| ||||| ||
Sbjct 645302 CGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCG 645243
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || ||||| || || ||||||||||| | || | || |||||||
Sbjct 645242 TCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 645183
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || |||| | | | |||||| ||| ||||| || | |||||
Sbjct 645182 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATA 645123
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| |||||||| || ||||| || ||||| |||||
Sbjct 645122 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088
>seq2
Length=4288194
Score = 127 bits (140), Expect = 2e-24
Identities = 160/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| |||||| |||| || |||||| ||||| ||||| || | ||| ||||| |
Sbjct 329119 ACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGGCC 329060
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || | |||||| || || || || || ||||||||||| | ||| | || ||||||
Sbjct 329059 GTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTT 329000
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGA 43146
||| ||| || |||| ||| | || |||||| ||| || || || | ||| |
Sbjct 328999 GTCTTGGATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAA 328941
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || |||||||| | ||||| ||||||||||||||
Sbjct 328940 TCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||||| ||||| |||| ||| |||||| || || ||||| || | ||| ||||| |
Sbjct 329347 ACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCC 329288
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || | |||||| || || || || || ||||||||||| | ||| | || ||||||
Sbjct 329287 GTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTT 329228
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|||| ||| || |||| ||| | | | ||||| |||||||| || | ||| |
Sbjct 329227 GTCCTGGATCTTCGACTTGA-CGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAA 329169
Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
| || |||||||| || ||||| || || || |||||
Sbjct 329168 TCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || | || || |||||||| ||||| ||
Sbjct 328639 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 328580
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110
|| || ||||||||||| | ||| | || |||||||||| ||| | || | ||||
Sbjct 328579 GATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCC-TGAATCTTGCTCTTGACAT 328521
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||||| ||| || || |||| |||||||| ||||| || |||||||| |
Sbjct 328520 TGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGA 328461
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 328460 CGAAGATCTGCAT 328448
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | || || || | || || |||||||| ||||| ||
Sbjct 328867 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 328808
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | ||| | || ||||||||| ||| || |||| |||
Sbjct 328807 GATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGGATCTTGCTCTTGA-CGT 328749
Query 43112 CGCCAC-CGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| || |||||| ||| || || || | ||| || || |||||||| | ||||| |
Sbjct 328748 TGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGA 328689
Query 43171 CAAAGATTTGCAT 43183
|||||||||||||
Sbjct 328688 CAAAGATTTGCAT 328676
Score = 105 bits (116), Expect = 8e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||| || | || || || |||| || |||||||| ||||||||
Sbjct 328410 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAG 328351
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| || ||||||||||||| || | || |||||||||| ||| || |||| |||
Sbjct 328350 ATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 328292
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | || || || || || || | ||||||||| ||||| || |||||||| ||
Sbjct 328291 GTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGAC 328232
Query 43172 AAAGATTTGCAT 43183
|| || |||||
Sbjct 328231 GAAAATCTGCAT 328220
>seq3
Length=3655701
Score = 100 bits (110), Expect = 3e-16
Identities = 134/184 (73%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| || || ||||| || | ||| ||||| | || || |||||||| || || ||
Sbjct 2673599 CTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAA 2673658
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | ||| | || |||||||||| ||| || |||| |||
Sbjct 2673659 GATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTGA-CGT 2673717
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | ||||| || || || |||| |||||||| |||||||| || ||||| |
Sbjct 2673718 TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCA 2673777
Query 43171 CAAA 43174
| ||
Sbjct 2673778 CGAA 2673781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817414159280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |