Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 3e-26
seq3 116 8e-21
seq5 89.7 1e-12
>seq2
Length=4288194
Score = 134 bits (148), Expect = 3e-26
Identities = 427/659 (65%), Gaps = 21/659 (3%)
Strand=Plus/Plus
Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850
|| |||| ||||| | || || | ||| | | ||||| ||||| || ||||||
Sbjct 3315829 GCCATTGTCTACGACCGCGACTTCAACTACCAATACTTTGGCTTCAAGACCCTGGAGCGC 3315888
Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910
|| || |||||||| | || || ||||| || || || ||||||||| | |||||
Sbjct 3315889 TCCTACCTCCTCAAGCTCGACGGTAAGATTGTCGAGCGGCCGCAGCACATGATCATGCGT 3315948
Query 248911 GTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTGCTCGAGACGTACACCGGA 248967
||||| || || || | || |||| | ||| |||| ||||||| |||| |
Sbjct 3315949 GTGGCCGTTGGTAT---CTGGGGTGACGATGTGGAGCGCGTTGTCGAGACATACAACTAC 3316005
Query 248968 ATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027
||| | | | ||||| ||| | |||||||||||||||||||| || | |
Sbjct 3316006 ATGTCCAACAAGTTCTTCACACACGCCTCGCCGACGCTCTTCAACGCCGGCACGCCCCAG 3316065
Query 249028 AATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTAT 249087
||||||| || ||||| || | | |||| | |||||| | || ||||| ||
Sbjct 3316066 GCTCAGCTGTCTTCCTGCTTCCTCGTGGACATGAAGGACGACAGCATTGAGGGCATCTAC 3316125
Query 249088 GACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCC 249144
|||||||| || |||| || | ||| || || || || || ||||||||
Sbjct 3316126 GACACGCTCAA---GACGTGTGCCATGATCTCCAAGACGGCCGGTGGCATCGGTCTGAAT 3316182
Query 249145 GTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGT 249204
||| | ||| || || | || || ||||| || || || || | ||
Sbjct 3316183 GTCCACCGCATTCGCGCCACCGGCTCCTACATTGCCGGCACCAACGGCACATCCAACGGC 3316242
Query 249205 ATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG---- 249260
||| | || | ||||| |||| | ||| ||| | | | | |||||| ||
Sbjct 3316243 ATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCCGCTACGTGGACCAGGGTGGCAAC 3316302
Query 249261 --GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAG 249318
||||| || | ||| ||| || ||||| ||||||||||||| | || |||
Sbjct 3316303 AAGCGCCCC---GGTGCCTTCTGCATCTACTTGGAGCCGTGGCACGCCGATGTCTTTGAG 3316359
Query 249319 TTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTAC 249378
||||||||| || |||||| | || || ||| | | || ||||| || ||| |
Sbjct 3316360 TTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGGTCCGTGCCCGTGATCTTTTCCTC 3316419
Query 249379 GGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437
| || ||| || |||| |||||||| || || || || ||||||| ||||||||
Sbjct 3316420 GCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCAACGGCGAGTGGACGCT 3316478
>seq3
Length=3655701
Score = 116 bits (128), Expect = 8e-21
Identities = 272/408 (67%), Gaps = 22/408 (5%)
Strand=Plus/Plus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
||||| || |||| ||| | || || ||||| || |||||||| || |||||||||||
Sbjct 3591230 CTTCCACACATGCTCTTCTATGGCCCCCCCGGCACCGGCAAGACATCCACCATCCTGGCC 3591289
Query 254061 CTGGCC--CGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACG 254118
|| ||| ||| |||| ||| | ||||| | |||||||||||||| ||||
Sbjct 3591290 CTCGCCAAGGAA--CTGTACGGCCCCGAATTCATGAAGGCCCGCGTGCTCGAGCTCAACG 3591347
Query 254119 CTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAA-GACTTTCTCC-----A 254172
| || ||||| ||||| | | | |||||||| ||| |||| |||||| ||
Sbjct 3591348 CCTCCGACGAGCGCGGCATCTCCATTGTCCGCGAAAAGGTCAAGGACTTTGCCCGCATGC 3591407
Query 254173 AGATGTCGATTTCGTCGTTC--CAACC----------CGGCTGTCCGCCTTTCAAGCTCG 254220
|| | | | | || | | ||| | ||| || || |||||||||
Sbjct 3591408 AGCTCACCAACCCCCCGCCCGGCTACCGCGACCGCTACCCCTGCCCTCCCTTCAAGCTCA 3591467
Query 254221 TGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGA 254280
| | || |||||||| ||| ||||||| ||||| ||| |||||| ||||| || |
Sbjct 3591468 TCGTTCTCGACGAGGCCGACTCCATGACCCAGGACGCCCAGAGCGCCCTGCGCCGCACCA 3591527
Query 254281 TGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCA 254340
||||||| || | | || || || ||||| | ||||||||||| | ||||
Sbjct 3591528 TGGAGACCTACAGCAAGATCACCCGCTTCTGCCTCATCTGCAACTACGTCACCCGCATCA 3591587
Query 254341 TCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388
||| ||| || || || ||| |||||| || |||| | |||||
Sbjct 3591588 TCGACCCCCTCGCCAGCCGCTGCAGCAAGTTCCGCTTCAAGAGCCTCG 3591635
>seq5
Length=2216499
Score = 89.7 bits (98), Expect = 1e-12
Identities = 120/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060
|| || ||| |||| || |||| || || || || |||||||| || || | ||||||
Sbjct 1855374 CTGCCGCATCTGCTGCTCTACGGGCCGCCGGGCACGGGCAAGACCTCGACGGTGCTGGCG 1855433
Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120
||||||||| | | | ||| | ||| || | || ||||| |||||||||||
Sbjct 1855434 CTGGCCCGACGCATCTATGGCTCCGAGAATCTGCGGCAGATGGTGCTGGAGCTGAACGCG 1855493
Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167
|| ||||| ||||| | ||||| || || || |||||||||| ||
Sbjct 1855494 TCGGACGACCGCGGCATCGACGTGGTGCGGGAGCAGATCAAGACGTT 1855540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073766042301568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |