Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2 134 3e-26 seq3 116 8e-21 seq5 89.7 1e-12 >seq2 Length=4288194 Score = 134 bits (148), Expect = 3e-26 Identities = 427/659 (65%), Gaps = 21/659 (3%) Strand=Plus/Plus Query 248791 GCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAA 248850 || |||| ||||| | || || | ||| | | ||||| ||||| || |||||| Sbjct 3315829 GCCATTGTCTACGACCGCGACTTCAACTACCAATACTTTGGCTTCAAGACCCTGGAGCGC 3315888 Query 248851 TCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGA 248910 || || |||||||| | || || ||||| || || || ||||||||| | ||||| Sbjct 3315889 TCCTACCTCCTCAAGCTCGACGGTAAGATTGTCGAGCGGCCGCAGCACATGATCATGCGT 3315948 Query 248911 GTGGCTGTCGGGATTCACAAGGATGACA---TAGAGAGCGTGCTCGAGACGTACACCGGA 248967 ||||| || || || | || |||| | ||| |||| ||||||| |||| | Sbjct 3315949 GTGGCCGTTGGTAT---CTGGGGTGACGATGTGGAGCGCGTTGTCGAGACATACAACTAC 3316005 Query 248968 ATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027 ||| | | | ||||| ||| | |||||||||||||||||||| || | | Sbjct 3316006 ATGTCCAACAAGTTCTTCACACACGCCTCGCCGACGCTCTTCAACGCCGGCACGCCCCAG 3316065 Query 249028 AATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTAT 249087 ||||||| || ||||| || | | |||| | |||||| | || ||||| || Sbjct 3316066 GCTCAGCTGTCTTCCTGCTTCCTCGTGGACATGAAGGACGACAGCATTGAGGGCATCTAC 3316125 Query 249088 GACACGCTTAAACAGACG---GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCC 249144 |||||||| || |||| || | ||| || || || || || |||||||| Sbjct 3316126 GACACGCTCAA---GACGTGTGCCATGATCTCCAAGACGGCCGGTGGCATCGGTCTGAAT 3316182 Query 249145 GTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGT 249204 ||| | ||| || || | || || ||||| || || || || | || Sbjct 3316183 GTCCACCGCATTCGCGCCACCGGCTCCTACATTGCCGGCACCAACGGCACATCCAACGGC 3316242 Query 249205 ATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGG---- 249260 ||| | || | ||||| |||| | ||| ||| | | | | |||||| || Sbjct 3316243 ATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCCGCTACGTGGACCAGGGTGGCAAC 3316302 Query 249261 --GCGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAG 249318 ||||| || | ||| ||| || ||||| ||||||||||||| | || ||| Sbjct 3316303 AAGCGCCCC---GGTGCCTTCTGCATCTACTTGGAGCCGTGGCACGCCGATGTCTTTGAG 3316359 Query 249319 TTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTAC 249378 ||||||||| || |||||| | || || ||| | | || ||||| || ||| | Sbjct 3316360 TTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGGTCCGTGCCCGTGATCTTTTCCTC 3316419 Query 249379 GGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCT 249437 | || ||| || |||| |||||||| || || || || ||||||| |||||||| Sbjct 3316420 GCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCAACGGCGAGTGGACGCT 3316478 >seq3 Length=3655701 Score = 116 bits (128), Expect = 8e-21 Identities = 272/408 (67%), Gaps = 22/408 (5%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 ||||| || |||| ||| | || || ||||| || |||||||| || ||||||||||| Sbjct 3591230 CTTCCACACATGCTCTTCTATGGCCCCCCCGGCACCGGCAAGACATCCACCATCCTGGCC 3591289 Query 254061 CTGGCC--CGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACG 254118 || ||| ||| |||| ||| | ||||| | |||||||||||||| |||| Sbjct 3591290 CTCGCCAAGGAA--CTGTACGGCCCCGAATTCATGAAGGCCCGCGTGCTCGAGCTCAACG 3591347 Query 254119 CTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAA-GACTTTCTCC-----A 254172 | || ||||| ||||| | | | |||||||| ||| |||| |||||| || Sbjct 3591348 CCTCCGACGAGCGCGGCATCTCCATTGTCCGCGAAAAGGTCAAGGACTTTGCCCGCATGC 3591407 Query 254173 AGATGTCGATTTCGTCGTTC--CAACC----------CGGCTGTCCGCCTTTCAAGCTCG 254220 || | | | | || | | ||| | ||| || || ||||||||| Sbjct 3591408 AGCTCACCAACCCCCCGCCCGGCTACCGCGACCGCTACCCCTGCCCTCCCTTCAAGCTCA 3591467 Query 254221 TGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGA 254280 | | || |||||||| ||| ||||||| ||||| ||| |||||| ||||| || | Sbjct 3591468 TCGTTCTCGACGAGGCCGACTCCATGACCCAGGACGCCCAGAGCGCCCTGCGCCGCACCA 3591527 Query 254281 TGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCA 254340 ||||||| || | | || || || ||||| | ||||||||||| | |||| Sbjct 3591528 TGGAGACCTACAGCAAGATCACCCGCTTCTGCCTCATCTGCAACTACGTCACCCGCATCA 3591587 Query 254341 TCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCAGCACCCTCG 254388 ||| ||| || || || ||| |||||| || |||| | ||||| Sbjct 3591588 TCGACCCCCTCGCCAGCCGCTGCAGCAAGTTCCGCTTCAAGAGCCTCG 3591635 >seq5 Length=2216499 Score = 89.7 bits (98), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 254001 CTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCG 254060 || || ||| |||| || |||| || || || || |||||||| || || | |||||| Sbjct 1855374 CTGCCGCATCTGCTGCTCTACGGGCCGCCGGGCACGGGCAAGACCTCGACGGTGCTGGCG 1855433 Query 254061 CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCT 254120 ||||||||| | | | ||| | ||| || | || ||||| ||||||||||| Sbjct 1855434 CTGGCCCGACGCATCTATGGCTCCGAGAATCTGCGGCAGATGGTGCTGGAGCTGAACGCG 1855493 Query 254121 TCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTT 254167 || ||||| ||||| | ||||| || || || |||||||||| || Sbjct 1855494 TCGGACGACCGCGGCATCGACGTGGTGCGGGAGCAGATCAAGACGTT 1855540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073766042301568