Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq10 131 1e-25 seq2 131 1e-25 seq3 91.5 1e-13 >seq10 Length=919426 Score = 131 bits (144), Expect = 1e-25 Identities = 160/217 (74%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||||||||||||||| |||||||||||| ||| || |||| ||| Sbjct 645296 ACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCGTCCTCC 645237 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 645236 AGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 645177 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| ||||||||| | ||| || |||||| Sbjct 645176 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATAGTCTTG 645117 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT-GTTGCCT 45343 ||||| || ||||| || ||||| ||||| ||||||| Sbjct 645116 CCCGTGAGGGTCTTGACGAAGATCTGCATGGTTGCCT 645080 >seq2 Length=4288194 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||||||| |||||||||||||||||||||| ||| || |||| ||| Sbjct 329112 ACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTCCGGCCGTCTTCC 329053 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || || || |||| ||||| ||||| || || | ||||||||||| Sbjct 329052 AACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328993 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| | || | || | ||||| ||| ||||||| ||||||||||| Sbjct 328992 ATCTTGCTCTTGA-CGTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTT 328934 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||| ||||| ||||||||||||||| Sbjct 328933 GCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| ||||| ||||||||| ||||||||||| || ||| | || ||| Sbjct 328884 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCC 328825 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| ||||| ||||| || || | ||||||||||| Sbjct 328824 AGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCTTGG 328765 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| || | | || | ||||| ||| ||||||| ||||||||||| Sbjct 328764 ATCTTGCTCTTGAC-GTTGTCAATCGTGTCCGACGACTCAACCTCCAACGTAATCGTCTT 328706 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||| ||||| ||||||||||||||| Sbjct 328705 GCCCGTCAAGGTCTTGACAAAGATTTGCATG 328675 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||||||||| |||||||||||| ||| || |||| ||| Sbjct 329340 ACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTCTTCC 329281 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || || || |||| ||||| ||||| || || | |||||||||||| Sbjct 329280 AACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGG 329221 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||||| |||| |||||||||||| Sbjct 329220 ATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGTCTTG 329161 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| ||||| || || || ||||| Sbjct 329160 CCCGTCAGGGTCTTGACGAAAATCTGCAT 329132 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || ||| |||||||| |||||||||||| || ||| |||| ||| Sbjct 328428 ACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCC 328369 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | ||||| |||||||| || | |||||||||||| Sbjct 328368 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGG 328309 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||| | ||| ||||| | || || |||||| Sbjct 328308 ATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGTCTTG 328249 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || ||||| || || || |||||| || Sbjct 328248 CCGGTGAGCGTCTTGACGAAAATCTGCATGATG 328216 >seq3 Length=3655701 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| ||| || | || || Sbjct 2673582 ACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCATCCTCG 2673641 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || |||| ||||| ||||| || || | |||||||||||| Sbjct 2673642 AGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGG 2673701 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| ||| ||||| | ||| || |||||| Sbjct 2673702 ATCTTGCTCTTGACGTTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTG 2673761 Query 45308 CCCGTCAGAGTCTTCACAAA 45327 ||||| || |||||||| || Sbjct 2673762 CCCGTGAGGGTCTTCACGAA 2673781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075074810546