Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 136 5e-27 >seq2 Length=4288194 Score = 136 bits (150), Expect = 5e-27 Identities = 449/684 (66%), Gaps = 22/684 (3%) Strand=Plus/Minus Query 66018 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 66077 || |||| || ||||||| || |||||| |||| || ||| || ||||| || ||| Sbjct 3316496 CACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGA 3316437 Query 66078 TCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137 || || ||||| ||||| | || | ||| | || | ||||| || || ||| Sbjct 3316436 TCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTC 3316377 Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197 || || || |||||| | | | ||| |||||||| |||||||| ||| || | Sbjct 3316376 TTCCGCAGGTCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATG--CAGA 3316319 Query 66198 A--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255 | | || || || ||||| || ||||| || | ||| | || ||||| ||| | || | Sbjct 3316318 AGGCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACAC 3316259 Query 66256 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315 | ||| || || || || |||||||| || ||||| |||| || ||| || | | Sbjct 3316258 GAAGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGG 3316199 Query 66316 CACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 | ||||| | ||| | |||| || || || ||| | || ||||| | || || Sbjct 3316198 CGCGAATGCGGTGGACATTCA--GACCGATGCCACCGGCCGTCTTGGAGATCATGGCACA 3316141 Query 66374 TCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 66432 ||| || | ||| || ||||||||||| || || || ||| |||||| | || || | Sbjct 3316140 -CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAGC 3316082 Query 66433 AGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488 || ||||| | ||| | || || || || || || | || || || ||||| Sbjct 3316081 AGGAAGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGT 3316026 Query 66489 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATT 66546 || || | || | || | |||| ||||| ||||| | | | || | ||| || Sbjct 3316025 GTGAAGAACTTGTTGGACATGTAG-TTGTATGTCTCGACAACGCGCTCCACATCGTCACC 3315967 Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606 | || || || || |||||||| | ||||||||| || | || || ||||| || Sbjct 3315966 CCAG-ATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGACAATCTTACCGT 3315908 Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666 | || | | |||||| |||| || || || ||||| || | ||| |||| Sbjct 3315907 CGAGCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGT 3315848 Query 66667 CTCGTTCGTAAATAATAACCGAGT 66690 | || ||||| | ||| |||||| Sbjct 3315847 CGCGGTCGTAGACAATGGCCGAGT 3315824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172586093840