Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq2 136 5e-27
>seq2
Length=4288194
Score = 136 bits (150), Expect = 5e-27
Identities = 449/684 (66%), Gaps = 22/684 (3%)
Strand=Plus/Minus
Query 66018 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 66077
|| |||| || ||||||| || |||||| |||| || ||| || ||||| || |||
Sbjct 3316496 CACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGA 3316437
Query 66078 TCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137
|| || ||||| ||||| | || | ||| | || | ||||| || || |||
Sbjct 3316436 TCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTC 3316377
Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197
|| || || |||||| | | | ||| |||||||| |||||||| ||| || |
Sbjct 3316376 TTCCGCAGGTCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATG--CAGA 3316319
Query 66198 A--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 66255
| | || || || ||||| || ||||| || | ||| | || ||||| ||| | || |
Sbjct 3316318 AGGCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACAC 3316259
Query 66256 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTG 66315
| ||| || || || || |||||||| || ||||| |||| || ||| || | |
Sbjct 3316258 GAAGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGG 3316199
Query 66316 CACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373
| ||||| | ||| | |||| || || || ||| | || ||||| | || ||
Sbjct 3316198 CGCGAATGCGGTGGACATTCA--GACCGATGCCACCGGCCGTCTTGGAGATCATGGCACA 3316141
Query 66374 TCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 66432
||| || | ||| || ||||||||||| || || || ||| |||||| | || || |
Sbjct 3316140 -CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAGC 3316082
Query 66433 AGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488
|| ||||| | ||| | || || || || || || | || || || |||||
Sbjct 3316081 AGGAAGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGT 3316026
Query 66489 GTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATT 66546
|| || | || | || | |||| ||||| ||||| | | | || | ||| ||
Sbjct 3316025 GTGAAGAACTTGTTGGACATGTAG-TTGTATGTCTCGACAACGCGCTCCACATCGTCACC 3315967
Query 66547 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 66606
| || || || || |||||||| | ||||||||| || | || || ||||| ||
Sbjct 3315966 CCAG-ATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGACAATCTTACCGT 3315908
Query 66607 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 66666
| || | | |||||| |||| || || || ||||| || | ||| ||||
Sbjct 3315907 CGAGCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGT 3315848
Query 66667 CTCGTTCGTAAATAATAACCGAGT 66690
| || ||||| | ||| ||||||
Sbjct 3315847 CGCGGTCGTAGACAATGGCCGAGT 3315824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658172586093840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |