Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 138 2e-27 >seq2 Length=4288194 Score = 138 bits (152), Expect = 2e-27 Identities = 444/675 (66%), Gaps = 22/675 (3%) Strand=Plus/Minus Query 79906 GGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATC 79965 || ||||||| || |||||| || | || || || ||||| || ||||| || ||| Sbjct 3316487 GGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGATCGGGGATC 3316428 Query 79966 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 80025 || ||||| | || ||||| | || | |||||| || || ||||| || Sbjct 3316427 CAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGG 3316368 Query 80026 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA--CTCCCG 80083 || |||||| | | | ||| | |||||||| |||||||| ||| || || | || | Sbjct 3316367 TCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATG--CAGAAGGCACCGG 3316310 Query 80084 GTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 80143 | || ||||| || ||||| || | ||| | || ||||| ||| | || | | ||| | Sbjct 3316309 GGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAG 3316250 Query 80144 GAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 80203 | || || || |||||||| || ||||| |||| || ||| || |||| ||||| Sbjct 3316249 GGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGC 3316190 Query 80204 --TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 80261 | ||| | |||| || || || ||| | || ||||| | || || ||| || | Sbjct 3316189 GGTGGACATTCA--GACCGATGCCACCGGCCGTCTTGGAGATCATGGCACA-CGTCTTGA 3316133 Query 80262 -CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA 80320 ||| || ||||||||||| ||||| || || |||||| | || || ||| ||||| Sbjct 3316132 GCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACA 3316073 Query 80321 TTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 80376 | ||| | || || || || || || | || || || ||||| || || | Sbjct 3316072 ---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGAAC 3316017 Query 80377 TTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTC 80434 || | |||| |||| ||||| ||||| | | | || | ||| || | || | Sbjct 3316016 TTGTTGGACATGTAG-TTGTATGTCTCGACAACGCGCTCCACATCGTCACCCCAG-ATAC 3315959 Query 80435 CTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 80494 | || || |||||||| | ||||||||| || | || || ||||| | | || | Sbjct 3315958 CAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGACAATCTTACCGTCGAGCTTGA 3315899 Query 80495 ACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 80554 | ||| || |||| || || || ||||| || | ||| ||||| || |||| Sbjct 3315898 GGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGT 3315839 Query 80555 AAATAATAACCGAGT 80569 | | ||| |||||| Sbjct 3315838 AGACAATGGCCGAGT 3315824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268566562640