Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 2e-27
>seq2
Length=4288194
Score = 138 bits (152), Expect = 2e-27
Identities = 444/675 (66%), Gaps = 22/675 (3%)
Strand=Plus/Minus
Query 79906 GGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATC 79965
|| ||||||| || |||||| || | || || || ||||| || ||||| || |||
Sbjct 3316487 GGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGATCGGGGATC 3316428
Query 79966 CAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGA 80025
|| ||||| | || ||||| | || | |||||| || || ||||| ||
Sbjct 3316427 CAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGG 3316368
Query 80026 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAA--CTCCCG 80083
|| |||||| | | | ||| | |||||||| |||||||| ||| || || | || |
Sbjct 3316367 TCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATG--CAGAAGGCACCGG 3316310
Query 80084 GTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 80143
| || ||||| || ||||| || | ||| | || ||||| ||| | || | | ||| |
Sbjct 3316309 GGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAG 3316250
Query 80144 GAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 80203
| || || || |||||||| || ||||| |||| || ||| || |||| |||||
Sbjct 3316249 GGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGGCGCGAATGC 3316190
Query 80204 --TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 80261
| ||| | |||| || || || ||| | || ||||| | || || ||| || |
Sbjct 3316189 GGTGGACATTCA--GACCGATGCCACCGGCCGTCTTGGAGATCATGGCACA-CGTCTTGA 3316133
Query 80262 -CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACA 80320
||| || ||||||||||| ||||| || || |||||| | || || ||| |||||
Sbjct 3316132 GCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACA 3316073
Query 80321 TTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 80376
| ||| | || || || || || || | || || || ||||| || || |
Sbjct 3316072 ---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGAAC 3316017
Query 80377 TTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTC 80434
|| | |||| |||| ||||| ||||| | | | || | ||| || | || |
Sbjct 3316016 TTGTTGGACATGTAG-TTGTATGTCTCGACAACGCGCTCCACATCGTCACCCCAG-ATAC 3315959
Query 80435 CTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCA 80494
| || || |||||||| | ||||||||| || | || || ||||| | | || |
Sbjct 3315958 CAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGACAATCTTACCGTCGAGCTTGA 3315899
Query 80495 ACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 80554
| ||| || |||| || || || ||||| || | ||| ||||| || ||||
Sbjct 3315898 GGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCGCGGTCGT 3315839
Query 80555 AAATAATAACCGAGT 80569
| | ||| ||||||
Sbjct 3315838 AGACAATGGCCGAGT 3315824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718268566562640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |