Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq2 132 6e-26
>seq2
Length=4288194
Score = 132 bits (146), Expect = 6e-26
Identities = 447/682 (66%), Gaps = 22/682 (3%)
Strand=Plus/Minus
Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039
|| ||||| || ||||||| | |||||| || | | || || ||||| || |||
Sbjct 3316496 CACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGA 3316437
Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099
|| || ||||| ||||| | || ||||| | || | |||||| || || |||
Sbjct 3316436 TCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTC 3316377
Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159
|| || || |||||| | | | ||| | |||||||| |||||||| ||| || |
Sbjct 3316376 TTCCGCAGGTCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATG--CAGA 3316319
Query 72160 A--CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217
| | || || || ||||| || ||||| || | ||| | || ||||| ||| | || |
Sbjct 3316318 AGGCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACAC 3316259
Query 72218 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 72277
| ||| || || || || ||||||| || ||||| |||| || ||| || |||
Sbjct 3316258 GAAGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGG 3316199
Query 72278 CACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335
| ||||| || ||| | |||| || || || ||| | || ||||| | || ||
Sbjct 3316198 CGCGAATGCGGTGGACATTCA--GACCGATGCCACCGGCCGTCTTGGAGATCATGGCACA 3316141
Query 72336 TCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394
||| || | ||| || ||||||||||| || || || ||| |||||| | || || |
Sbjct 3316140 -CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAGC 3316082
Query 72395 AGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450
|| ||||| | ||| | || || || || || || | || || || |||||
Sbjct 3316081 AGGAAGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGT 3316026
Query 72451 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATT 72508
|| || | || | |||| |||| ||||| ||||| | | | || | ||| ||
Sbjct 3316025 GTGAAGAACTTGTTGGACATGTAG-TTGTATGTCTCGACAACGCGCTCCACATCGTCACC 3315967
Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568
| || || || || |||||||| | ||| ||||| || | || || ||||| |
Sbjct 3315966 CCAG-ATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGACAATCTTACCGT 3315908
Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628
| || | | |||||| |||| || || || ||||| || | ||| ||||
Sbjct 3315907 CGAGCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGT 3315848
Query 72629 CTCGTTCGTAAATAATAACCGA 72650
| || ||||| | ||| ||||
Sbjct 3315847 CGCGGTCGTAGACAATGGCCGA 3315826
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138981879760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |