Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 132 6e-26 >seq2 Length=4288194 Score = 132 bits (146), Expect = 6e-26 Identities = 447/682 (66%), Gaps = 22/682 (3%) Strand=Plus/Minus Query 71980 CATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGA 72039 || ||||| || ||||||| | |||||| || | | || || ||||| || ||| Sbjct 3316496 CACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCTTCATGAACAGA 3316437 Query 72040 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTC 72099 || || ||||| ||||| | || ||||| | || | |||||| || || ||| Sbjct 3316436 TCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCCTGGTTC 3316377 Query 72100 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 72159 || || || |||||| | | | ||| | |||||||| |||||||| ||| || | Sbjct 3316376 TTCCGCAGGTCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGTAGATG--CAGA 3316319 Query 72160 A--CTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 72217 | | || || || ||||| || ||||| || | ||| | || ||||| ||| | || | Sbjct 3316318 AGGCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTTGTTAAAGACAC 3316259 Query 72218 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 72277 | ||| || || || || ||||||| || ||||| |||| || ||| || ||| Sbjct 3316258 GAAGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTAGGAGCCGGTGG 3316199 Query 72278 CACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 | ||||| || ||| | |||| || || || ||| | || ||||| | || || Sbjct 3316198 CGCGAATGCGGTGGACATTCA--GACCGATGCCACCGGCCGTCTTGGAGATCATGGCACA 3316141 Query 72336 TCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 72394 ||| || | ||| || ||||||||||| || || || ||| |||||| | || || | Sbjct 3316140 -CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTCCACGAGGAAGC 3316082 Query 72395 AGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 72450 || ||||| | ||| | || || || || || || | || || || ||||| Sbjct 3316081 AGGAAGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGT 3316026 Query 72451 GTAAACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATT 72508 || || | || | |||| |||| ||||| ||||| | | | || | ||| || Sbjct 3316025 GTGAAGAACTTGTTGGACATGTAG-TTGTATGTCTCGACAACGCGCTCCACATCGTCACC 3315967 Query 72509 GATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTAT 72568 | || || || || |||||||| | ||| ||||| || | || || ||||| | Sbjct 3315966 CCAG-ATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGACAATCTTACCGT 3315908 Query 72569 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 72628 | || | | |||||| |||| || || || ||||| || | ||| |||| Sbjct 3315907 CGAGCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTATTGGTAGTTGAAGT 3315848 Query 72629 CTCGTTCGTAAATAATAACCGA 72650 | || ||||| | ||| |||| Sbjct 3315847 CGCGGTCGTAGACAATGGCCGA 3315826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138981879760