Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2 181 2e-40
seq1 140 5e-28
>seq2
Length=4288194
Score = 181 bits (200), Expect = 2e-40
Identities = 327/473 (69%), Gaps = 4/473 (1%)
Strand=Plus/Plus
Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935
||||| ||||| || || || || || | | |||||||||| || |||||||| ||
Sbjct 3316291 CAGGGTGGCAACAAGCGCCCCGGTGCCTTCTGCATCTACTTGGAGCCGTGGCACGCCGAT 3316350
Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995
|| ||||| || | || |||| || ||| || || |||| || ||| | ||
Sbjct 3316351 GTCTTTGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGGTCCGTGCCCGTGAT 3316410
Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055
| || || |||||| | || ||| ||||||||||||| || | | ||| |
Sbjct 3316411 CTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCAACGGCGAG 3316470
Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115
|||| || ||||||||| | || |||| ||| | ||||||| ||||| ||||||
Sbjct 3316471 TGGACGCTGATGTGCCCCAATGAGTGCGCCGGCCTGGCGGATTGCTACGGCGAGGAGTTT 3316530
Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174
||||| |||| | |||||| |||||||| ||| ||| | ||| | || |
Sbjct 3316531 GAGGCGCTGTACGAGAAGTACGAGAGCGAGGGCCGTGGTCGTAAGAAG-GTCAAGGC-CC 3316588
Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233
|||| |||||| | ||||| || ||| ||| ||||| || | |||| ||| ||||
Sbjct 3316589 AGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCGTTCATGCTCT 3316648
Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293
||||||| | || ||||| |||||||| || ||||||||||| |||| |
Sbjct 3316649 ACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAGCTCGA 3316708
Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346
| ||||||||||| ||||| |||||| | | ||||||||| ||| || |||
Sbjct 3316709 ACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGAGGTGGCCGTGTGC 3316761
>seq1
Length=5014741
Score = 140 bits (154), Expect = 5e-28
Identities = 307/452 (68%), Gaps = 25/452 (6%)
Strand=Plus/Plus
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486
|| |||||||| || ||||| |||||||| ||||| || || || |||||||
Sbjct 1638426 CTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCTTCTCGTCCATCTTC 1638485
Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546
|||||||||||||| || || ||||| || ||||| | || ||| | || || ||
Sbjct 1638486 TGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATTTCCCGC 1638545
Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCG 125604
||||||||||| ||| ||||||||| || ||||| || || || | | | ||||
Sbjct 1638546 GACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCTCCCACCTGAACAACCGCCCG 1638605
Query 125605 AG--TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGA 125662
|| |||||| || | | | ||||| | ||||||||| | ||| ||
Sbjct 1638606 AGCAAGCAGAT-CATCCAGG------------ACATTATCGTCGATGCCGTCAAGATTGA 1638652
Query 125663 ACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAA 125721
|| |||||| | ||||| |||| || | || | | ||||||||| || || |
Sbjct 1638653 GCAGGAGTTTTTGACCGAGGCCCTGCC-CTGTGCTCTTCTGGGCATGAACGCCACCCTCA 1638711
Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CA 125778
|| ||||||| ||||| || || || ||||| ||| || | ||| || ||
Sbjct 1638712 TGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTGCTGGTCG---CTCTCGGCAACGACA 1638768
Query 125779 AGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGA 125838
|| | ||| | ||| ||||||||||| || ||| | ||| || || | || ||||
Sbjct 1638769 AGGTCTACCGCTCCACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGGCGGCAAGA 1638828
Query 125839 CCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870
||||||| ||||||||| ||| |||| |||
Sbjct 1638829 CCAACTTCTTCGAGAAGCGCGTCGGCGACTAC 1638860
Score = 136 bits (150), Expect = 6e-27
Identities = 207/290 (71%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| |||||||||| ||| |||| || || ||||||| ||| ||| | || |||
Sbjct 1637953 ATCTGGCAAATGTACAAGAAGCACGAGGCTTCTTTCTGGACGGCCGAGGAGATTGACCTG 1638012
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||||||| |||| ||| | | || ||| || ||||| || || ||
Sbjct 1638013 TCCAAGGACCTGCACGACTGGCACAACCGCCTGAACGACGACGAGCGCTTCTTCATCTCC 1638072
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197
||||| | |||||||| |||| ||| ||||| ||||||||||| || || || || ||
Sbjct 1638073 CACATCCTCGCCTTCTTCGCCGCCTCGGATGGCATCGTCAACGAGAACCTCGTCGA-GCG 1638131
Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255
||| ||| | ||| | || |||| ||||||||||| ||||| ||||||
Sbjct 1638132 CTTCAGCGCCGAG--GTCCAGGTGCCCGAGGCCCGCTGCTTTTACGGCTTCCAGATCATG 1638189
Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
|| |||||| | ||||| || | |||||| || ||||||| |||||
Sbjct 1638190 ATGGAGAACATTCACTCCGAGACCTACTCTCTGCTCATTGACACCTACAT 1638239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741058959155760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |