Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 seq1 140 5e-28 >seq2 Length=4288194 Score = 181 bits (200), Expect = 2e-40 Identities = 327/473 (69%), Gaps = 4/473 (1%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | | |||||||||| || |||||||| || Sbjct 3316291 CAGGGTGGCAACAAGCGCCCCGGTGCCTTCTGCATCTACTTGGAGCCGTGGCACGCCGAT 3316350 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || ||||| || | || |||| || ||| || || |||| || ||| | || Sbjct 3316351 GTCTTTGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGGTCCGTGCCCGTGAT 3316410 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 | || || |||||| | || ||| ||||||||||||| || | | ||| | Sbjct 3316411 CTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCAACGGCGAG 3316470 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 |||| || ||||||||| | || |||| ||| | ||||||| ||||| |||||| Sbjct 3316471 TGGACGCTGATGTGCCCCAATGAGTGCGCCGGCCTGGCGGATTGCTACGGCGAGGAGTTT 3316530 Query 97116 GAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGAGTCGATGCACG 97174 ||||| |||| | |||||| |||||||| ||| ||| | ||| | || | Sbjct 3316531 GAGGCGCTGTACGAGAAGTACGAGAGCGAGGGCCGTGGTCGTAAGAAG-GTCAAGGC-CC 3316588 Query 97175 AGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCT 97233 |||| |||||| | ||||| || ||| ||| ||||| || | |||| ||| |||| Sbjct 3316589 AGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCGTTCATGCTCT 3316648 Query 97234 ACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCA 97293 ||||||| | || ||||| |||||||| || ||||||||||| |||| | Sbjct 3316649 ACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATCCGCAGCTCGA 3316708 Query 97294 ATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 | ||||||||||| ||||| |||||| | | ||||||||| ||| || ||| Sbjct 3316709 ACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGAGGTGGCCGTGTGC 3316761 >seq1 Length=5014741 Score = 140 bits (154), Expect = 5e-28 Identities = 307/452 (68%), Gaps = 25/452 (6%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || |||||||| || ||||| |||||||| ||||| || || || ||||||| Sbjct 1638426 CTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCTTCTCGTCCATCTTC 1638485 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGA 125546 |||||||||||||| || || ||||| || ||||| | || ||| | || || || Sbjct 1638486 TGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATTTCCCGC 1638545 Query 125547 GACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCTGCGTCCCG 125604 ||||||||||| ||| ||||||||| || ||||| || || || | | | |||| Sbjct 1638546 GACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTCTCCCACCTGAACAACCGCCCG 1638605 Query 125605 AG--TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGA 125662 || |||||| || | | | ||||| | ||||||||| | ||| || Sbjct 1638606 AGCAAGCAGAT-CATCCAGG------------ACATTATCGTCGATGCCGTCAAGATTGA 1638652 Query 125663 ACAAGAGTTTCTAACCGAATCCCTACCGGTCAGC-ATGATTGGCATGAACTGCAAGCTAA 125721 || |||||| | ||||| |||| || | || | | ||||||||| || || | Sbjct 1638653 GCAGGAGTTTTTGACCGAGGCCCTGCC-CTGTGCTCTTCTGGGCATGAACGCCACCCTCA 1638711 Query 125722 TGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CA 125778 || ||||||| ||||| || || || ||||| ||| || | ||| || || Sbjct 1638712 TGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTGCTGGTCG---CTCTCGGCAACGACA 1638768 Query 125779 AGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGA 125838 || | ||| | ||| ||||||||||| || ||| | ||| || || | || |||| Sbjct 1638769 AGGTCTACCGCTCCACCAATCCCTTTGACTTTATGGAGAACATCTCCCTGGGCGGCAAGA 1638828 Query 125839 CCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||||||| ||||||||| ||| |||| ||| Sbjct 1638829 CCAACTTCTTCGAGAAGCGCGTCGGCGACTAC 1638860 Score = 136 bits (150), Expect = 6e-27 Identities = 207/290 (71%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| |||||||||| ||| |||| || || ||||||| ||| ||| | || ||| Sbjct 1637953 ATCTGGCAAATGTACAAGAAGCACGAGGCTTCTTTCTGGACGGCCGAGGAGATTGACCTG 1638012 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||||||| |||| ||| | | || ||| || ||||| || || || Sbjct 1638013 TCCAAGGACCTGCACGACTGGCACAACCGCCTGAACGACGACGAGCGCTTCTTCATCTCC 1638072 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACG 125197 ||||| | |||||||| |||| ||| ||||| ||||||||||| || || || || || Sbjct 1638073 CACATCCTCGCCTTCTTCGCCGCCTCGGATGGCATCGTCAACGAGAACCTCGTCGA-GCG 1638131 Query 125198 ATTCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATG 125255 ||| ||| | ||| | || |||| ||||||||||| ||||| |||||| Sbjct 1638132 CTTCAGCGCCGAG--GTCCAGGTGCCCGAGGCCCGCTGCTTTTACGGCTTCCAGATCATG 1638189 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 || |||||| | ||||| || | |||||| || ||||||| ||||| Sbjct 1638190 ATGGAGAACATTCACTCCGAGACCTACTCTCTGCTCATTGACACCTACAT 1638239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058959155760