Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq1 134 1e-26 >seq1 Length=5014741 Score = 134 bits (148), Expect = 1e-26 Identities = 201/277 (73%), Gaps = 19/277 (7%) Strand=Plus/Minus Query 99502 CGCCCCCAGCCCAGGCTGGCGTGCGAGCCCGGCGCCCCGCTCC-GCACGGTGAGCGAGGT 99560 ||| ||||||| || ||||||||||||||| || | || || |||| || ||| || Sbjct 3781180 CGCTCCCAGCCGTGGTTGGCGTGCGAGCCCG-CGTCGTGCGCCCGCACCGTCAGCACCGT 3781122 Query 99561 GTTGAGCAGCAGCACGCCGCGGCGCGCCCA-GGCCTC--CAGGCAGCC---GTGCTGCGG 99614 ||||||| |||||||||||| ||||| ||| || ||||| || || | | || Sbjct 3781121 ATTGAGCATCAGCACGCCGCGCTCGGCCCACGGCGTCAGCAGGCCTCCCTTGTCCGGGGG 3781062 Query 99615 CCGCGG------GGTCCCGGGGAAGTTCTTCTGCACGGCCGCGTAGATGTTCTGGAGGCT 99668 | |||| |||| ||| ||| |||| | || |||| ||||| | || Sbjct 3781061 CGGCGGCAGAAAGGTC---GGGTAGTCGTTCTTGAGCGCGACGTACATGTTGCGCAGCGA 3781005 Query 99669 GGGCGGGATCGGAACGCCGCGG-TTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGC 99727 ||||| ||| | | |||| || ||| |||||| |||||||||||||| |||||| Sbjct 3781004 CGGCGGCGGCGGGATGG-GCGGCTTGACGGAGAAGGCGAGGCCGTGGGCCTGGCCGTGGT 3780946 Query 99728 TGTGGTAGGGGTCCTGGCCCAGGATGACGACCTTGAC 99764 ||||||||||||||||||| || |||||||||||||| Sbjct 3780945 TGTGGTAGGGGTCCTGGCCGAGAATGACGACCTTGAC 3780909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440899056707760