Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 102 2e-16 >seq2 Length=4288194 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || || || | || || || || || || ||| Sbjct 328644 GTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCA 328585 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 ||||| || || | ||| || || || || || || || || ||||||||| ||||| || Sbjct 328584 GCAAAGATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCCTGAATC-TTGCTCTT 328526 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || ||| | || ||||| || || || ||||| || ||||| || Sbjct 328525 GACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGT 328466 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 328465 CTTGACGAAGATCTGCAT 328448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398016440408