Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 9e-16 >seq1 Length=5014741 Score = 98.7 bits (108), Expect = 9e-16 Identities = 178/257 (69%), Gaps = 5/257 (2%) Strand=Plus/Minus Query 5502 CGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTT 5561 |||||||| || || ||||| ||||| | | | | ||||| || ||||| Sbjct 674107 CGCCCGTGCTGCCAAACCCGCCGGCGCCGCGCACGCTCGCTTCCAGCTGAGCGACCTCGA 674048 Query 5562 CCACATCGGGGAACGCAGCGCGCTCGCAGATC-AGCTGCGCTATTCGGTCGCCCGTCTTT 5620 |||| || || || |||||| ||| | |||||||| | |||||||| | Sbjct 674047 CCACGTCTGGCGTGACAATGCGCTC-CAGCACGAGCTGCGCCACGCGGTCGCCAGCGGCA 673989 Query 5621 ACCTCGAAATCGTTGT---GGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 | | || |||||| || || |||||| |||| ||||| ||| | |||||||||| Sbjct 673988 ATGGCAAAGTCGTTGACGGGGTCGTGGTTGAAGAGCAGCACGCGCACCTGGCCGCGGTAG 673929 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 |||||||| || || ||||| ||| ||||| ||||||||| | || || || || || Sbjct 673928 TCGGCGTCAATGACACCCGCTCCCGTATCGATAAAGTGCTTGGCGGCAAGCCCCGACCGC 673869 Query 5738 GGAGCCACGCGGCCGTA 5754 || || | ||||||||| Sbjct 673868 GGCGCAATGCGGCCGTA 673852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430054263726512