Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_006151.1 Length=143461 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 3e-15 seq9 89.7 5e-13 >seq1 Length=5014741 Score = 96.9 bits (106), Expect = 3e-15 Identities = 191/274 (70%), Gaps = 13/274 (5%) Strand=Plus/Minus Query 94154 CGCGCCCAGCCGAGCGGGGCGTGGGAGCCGGGGACCCCGCGCC-GCACGGTCAGCGTCGT 94212 ||| |||||||| | |||||| ||||| | | | ||||| |||| |||||| ||| Sbjct 3781180 CGCTCCCAGCCGTGGTTGGCGTGCGAGCCCGCGTCGT-GCGCCCGCACCGTCAGCACCGT 3781122 Query 94213 GTTCAGCAGCAGCACCCCGCGGCGCGCCCA-GGCCTC--CAGGCAGCCGTGGGC---GGG 94266 || |||| |||||| ||||| ||||| ||| || ||||| || | | | ||| Sbjct 3781121 ATTGAGCATCAGCACGCCGCGCTCGGCCCACGGCGTCAGCAGGCCTCCCTTGTCCGGGGG 3781062 Query 94267 CGCGGGCAGC---GTCGGGTACGTCGCCCG-GACCGCCGCGAAGATGTTGGCCAGGCTCG 94322 || ||||| |||||||| |||| | || ||| || | |||||| ||| || Sbjct 3781061 CGGCGGCAGAAAGGTCGGGTA-GTCGTTCTTGAGCGCGACGTACATGTTGCGCAGCGACG 3781003 Query 94323 GGGGGATCGGCACCCCGCGCCGGACGCTGAAGGCCAGCCCGTGGGCCTGGCCCGGCCCGT 94382 | || ||| | || |||| |||||| || |||||||||||||| | || Sbjct 3781002 GCGGCGGCGGGATGGGCGGCTTGACGGAGAAGGCGAGGCCGTGGGCCTGGCCGTGGTTGT 3780943 Query 94383 GGTACGGGTCCTGGCCGATGATGACCACCTTGAC 94416 |||| ||||||||||||| ||||| |||||||| Sbjct 3780942 GGTAGGGGTCCTGGCCGAGAATGACGACCTTGAC 3780909 >seq9 Length=1086941 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 27259 TACCAGGGCGCCAAGGTGCTCGAGCCCGACTCGGGCTTCCACGTGGACCCGGTGCTCGTG 27318 ||| |||| |||| ||| ||||||| | | || ||| || ||| |||||| | Sbjct 999190 TACGAGGGTGCCACGGTCATCGAGCCTGTCCGTGGGTTCTACAAGGAGCCGGTGGCGACG 999131 Query 27319 CTGGACTTTGCCAGCCTGTACCCGAGCATCATCCAGGCGCACAACCTGTGCTTCACGACG 27378 || || |||||| |||||| || |||||||| |||||||||||||| |||| |||||| Sbjct 999130 CTTGATTTTGCCTCCCTGTATCCCAGCATCATGCAGGCGCACAACCTCTGCTATACGACG 999071 Query 27379 CTCG 27382 |||| Sbjct 999070 CTCG 999067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458947050842160