Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 389 1e-102 seq1 87.8 5e-12 >seq2 Length=4288194 Score = 389 bits (430), Expect = 1e-102 Identities = 1166/1775 (66%), Gaps = 30/1775 (2%) Strand=Plus/Plus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTA-TCAATGGTGATATTGTTGAACGCCCGCA 363458 ||||| ||||| |||||||| ||| || | ||| | ||||| || || ||||| Sbjct 3315874 AAGACCCTGGAGCGCTCCTACCTC-CTCAAGCTCGACGGTAAGATTGTCGAGCGGCCGCA 3315932 Query 363459 GCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGA 363518 ||| ||| | |||||||| || |||||||| | ||||| || || | || Sbjct 3315933 GCACATGATCATGCGTGTGGCCGTTGGTATCTGGGGTGACGATGTGGAGCGCGTTGTCGA 3315992 Query 363519 AACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAACAATGTACAAT 363576 ||||| || || | | || | | || ||||| |||||| |||| || | | ||| Sbjct 3315993 GACATACAA-CTAC-ATGTCCAACAAGTTCTTCACACACGCCTCGCCGACGCTCTTCAAC 3316050 Query 363577 GCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCC 363636 || || || | | | ||| ||||||| ||||| || | | ||||||||||| | Sbjct 3316051 GCCGGCACGCCCCAGGCTCAGCTGTCTTCCTGCTTCCTCGTGGACATGAAGGACGACAGC 3316110 Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 || ||||| |||| ||||| || |||| ||||| | || ||||||| || || || Sbjct 3316111 ATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATCTCCAAGACGGCCGGTGGC 3316170 Query 363697 ATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGGCAC-AGGGG 363754 || ||| | ||||| |||| || || | | |||||| |||||| | || Sbjct 3316171 ATCGGTCTGAATGTCCACCGCATTCGCGCCACCGG-CTCCTACATTGCCGGCACCAACGG 3316229 Query 363755 GATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCG 363814 | | || || || | | || ||||||||||| ||| |||| || || | ||||| | Sbjct 3316230 CACA-TCCAACGGCATCATCCCTATGCTTCGTGTCTTTAACAACACGGCCCGCTACGTGG 3316288 Query 363815 ACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT-TGCTATGTATCTCGAGCCTCATCATGCC 363873 |||||||||| |||||| || || || ||| || || | ||||| || ||| Sbjct 3316289 ACCAGGGTGGCAACAAGCGCCCCGGTGCCTTCTGC-ATCTACTTGGAGCCGTGGCACGCC 3316347 Query 363874 GATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGT 363933 ||| | |||||||| || || || ||||| ||| ||| || ||||| | ||||| ||| Sbjct 3316348 GATGTCTTTGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAGGAGGTCCGTGCCCGT 3316407 Query 363934 GATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC---AGGT 363990 ||||| ||| || || ||| | | || | || |||||||| |||||| | || Sbjct 3316408 GATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGTGTGGAGACCAACGGC 3316467 Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050 || ||| | || | ||||| | || || | || || | ||| | || || Sbjct 3316468 GAG---TGGACGCTGATGTGCCCCAATGAGTGCGCCGGCCTGGCGGATTGCTACGGCGAG 3316524 Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCC 364110 || | || || || ||||| ||||| || ||||| | |||||||| | Sbjct 3316525 GAGTTTGAGGCGCTGTACGAGAAGTACGAGAGCGAGGGCCGTGGTCGTAAGAAGGTCAAG 3316584 Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || |||||||| |||| ||||| |||| |||||| ||||| || | || | ||| Sbjct 3316585 GCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACGGGCAACCCGTTCATG 3316644 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||| || |||||||||||| ||||||| || |||| || || | || |||| Sbjct 3316645 CTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCA-TCCGCAG 3316703 Query 364231 AGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAA 364289 | ||||| || || |||||| | || ||| | || || |||||| ||||| || || Sbjct 3316704 CTCGAACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGAGGTGGCCGTGTGCAA 3316763 Query 364290 CCTTGCGTCGATCGCGCTTCCGGCGTTTGT------AAAAGATGGTACTTTTGACCACCA 364343 | | || ||| | || |||||| |||| || || | | | | |||| ||| Sbjct 3316764 CTTGGCCTCGCTGGCTCTTCCGTCGTTCGTCGACTATAACAACGAGTCGTATGACTTCCA 3316823 Query 364344 GCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAA 364403 || || | ||||| || | | | |||| ||| || | || ||| ||| Sbjct 3316824 GCGGCTGCACGACGTCACGCAGTTGGTTGTCCGCAACCTCAACCGCATCATTGACGTGAA 3316883 Query 364404 TTATTATCCAATTCCTGAAGC-CGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTG 364462 || || || | || || || ||| | || ||||| || || || |||||||| | Sbjct 3316884 CTACTACCCCGTGCCCGAGGCACGAAACAGC-AACATGCGCCACCGGCCCATTGGTCTGG 3316942 Query 364463 GTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACG 364522 |||| ||||| || || |||| || || ||| ||| | ||||| ||||| || | Sbjct 3316943 GTGTGCAGGGTCTGGCAGACGCCTTCCTGGCGCTGCGCATGCCCTTTGAGTCGCCCGAGG 3317002 Query 364523 CTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGT 364582 | || | || || ||| ||||||| || || || || || || |||| | |||| Sbjct 3317003 CACGCCTGCTGAACAAGCAGATCTTCGAGACCATCTACCACGCGGCGCTGACGGAGTCGT 3317062 Query 364583 GTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGG 364642 | | |||| || | | |||| | ||| || |||||||| || ||| | ||||||| Sbjct 3317063 GCGCGCTGGCCAAGATCGAGGGTACCTACCAAACATATGAGGGCTCTCCTGTGTCGCAGG 3317122 Query 364643 GAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGC 364702 | | | ||| || | ||| | || ||||| || | || ||| ||||||| ||| Sbjct 3317123 GCATTCTGCAGCCCGACATGTGGGACGTGACGCCCTCGGACCTGTGGGACTGGGACTCGC 3317182 Query 364703 TACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCA 364762 | || || | ||| |||| ||| |||||| || | ||||| ||||| | Sbjct 3317183 TGCGGCTGAAGATCAAGGAGCACGGTGTGCGCAACAGTCTGCTGGTGGCGCCGATGCCGA 3317242 Query 364763 CGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATC 364822 |||| || || | ||||| || || ||||||||||||||||| || | || ||| Sbjct 3317243 CGGCGTCGACGTCGCAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACACGTCCAACA 3317302 Query 364823 TTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGG 364882 | || || || || || || |||| || || | ||| || || || || |||||| Sbjct 3317303 TCTACTCGCGGCGTGTGCTGGCCGGCGAGTTCCAGGTGGTCAACCCGTGGCTGCTCAAGG 3317362 Query 364883 ATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATG 364942 | || |||| || |||||| |||| |||||||||| ||||| || | || | Sbjct 3317363 ACCTGGTCGACATGGGTCTGTGGTCGGACAACATGAAGAACCGCATCATTGCGGAGAACG 3317422 Query 364943 GTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTAT 365002 |||| | ||||||||||| | || | || | ||| | | ||||| || || | Sbjct 3317423 GTTCGATCCAGAACATTCCCAACATCCCGGCCGACATCAAGGCCCTGTACAAGACGGTGT 3317482 Query 365003 GGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTC 365062 |||| || || ||| || | | | ||||| || || || ||||| |||||| | Sbjct 3317483 GGGAGATCTCGCAGCGGACGATTGTGCAGATGGCTGCAGACCGTGGTGCCTTTATCGACC 3317542 Query 365063 AGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGC 365122 || |||||| | ||| | |||| | |||| ||| | |||| | ||| ||||| Sbjct 3317543 AGTCGCAGTCGCTGAACATCCACATGCGTGAGCCGACCATGGGCAAGATCACAAGCATGC 3317602 Query 365123 ATTTCTACGGG-TGGAAATCCGGTCTTAAGACAGG 365156 | ||| ||||| ||||| || || ||||| || Sbjct 3317603 ACTTC-ACGGGCTGGAAGCTGGGCCTCAAGACGGG 3317636 >seq1 Length=5014741 Score = 87.8 bits (96), Expect = 5e-12 Identities = 151/217 (70%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGA---ACAATGAACGTTCA--TTCGCGGAAC 22492 || ||||| || ||||| ||| ||||| |||| || || || || ||| | | Sbjct 1638366 AAGAAGGCCGAGTGGGCCCTGCGCTGGATTTCCGACAAGGA--GTCCACCTTTGCGCAGC 1638423 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 | || | |||||||||| || || ||||||||||| || || || | | |||| Sbjct 1638424 GCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGGCGCCTTCTCGTCCATCT 1638483 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 | ||||| || || |||| | ||||| ||||| || || || |||||| | ||| || Sbjct 1638484 TCTGGCTCAAGAAGCGTGGCCTGATGCCTGGTCTGACTTTCTCCAATGAGCTGATTTCCC 1638543 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCT 22649 | || ||||| || || ||||| ||||| || |||| Sbjct 1638544 GCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCT 1638580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353165820332