Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3 114 9e-21 seq2 95.1 8e-15 seq10 82.4 5e-11 >seq3 Length=3655701 Score = 114 bits (126), Expect = 9e-21 Identities = 203/294 (69%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 |||| |||||||||||||| ||| ||| ||| ||||| |||| || ||||| ||| Sbjct 2299873 GACGTCTTCTACCGCTACAAGATGGAGCGGATCCAGACCAAGATCGAAGGCAAGGGCAAC 2299932 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAG--TCGCTAAGGCGCTCGGACGCCCTG 6312 ||||| || |||||| | |||| | | | || |||| || | || | ||||| | Sbjct 2299933 GGTATCAAGACCGTCGTCACCAACCT--CAGCAGCGTCGCCCAGTCCCTGGCCCGCCCCG 2299990 Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372 |||| | | || || || || | ||| || ||||||||||| | |||| | Sbjct 2299991 GAGCCTATCTTATCAAGTACTTTGGCTTCGAGCTCGGCGCTCAGACCAACATTGACCCGC 2300050 Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432 |||| |||| ||| | ||||| | || | | |||||||| ||||||| || | Sbjct 2300051 CCGACGACCGCTGGATCATCAACGGCGCCCACGAGGCCGCCAAGCTCCAGGACTACCTCG 2300110 Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 ||||||| || |||||||||||| || | | ||| | ||||| ||||||| Sbjct 2300111 ACGGCTTCATCTCCAAGTTTGTGCTTTGCAAGAAGTGCAAGAACCCCGAGACCG 2300164 >seq2 Length=4288194 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||||| |||||| || || || |||||| ||||| ||||| || | Sbjct 329132 TACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGG 329073 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || |||| || || || || || ||||| || ||||| || || || | | Sbjct 329072 ACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCG 329013 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT-TCA 38267 ||| ||| || ||||| || || ||| || || | | || || | || ||| Sbjct 329012 GGATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGTC-CGACGACTCA 328954 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || ||||| || || ||||||||||| || || || || |||||| Sbjct 328953 ACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903 >seq10 Length=919426 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||| ||||| || || ||||||||||| || || ||||| || |||| || || Sbjct 645302 CGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCG 645243 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | || || || || || || ||||| || || || | ||| | ||| || ||| Sbjct 645242 TCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 645183 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTAA 38280 ||| || || ||| ||||| | || || || | || || || || | || | Sbjct 645182 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGAC--TCCACCTCAAGGGTGA 645125 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| || ||||| | ||| || ||||| ||||||||| || Sbjct 645124 TAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGGTT 645084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947093863606