Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq3 114 9e-21
seq2 95.1 8e-15
seq10 82.4 5e-11
>seq3
Length=3655701
Score = 114 bits (126), Expect = 9e-21
Identities = 203/294 (69%), Gaps = 4/294 (1%)
Strand=Plus/Plus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
|||| |||||||||||||| ||| ||| ||| ||||| |||| || ||||| |||
Sbjct 2299873 GACGTCTTCTACCGCTACAAGATGGAGCGGATCCAGACCAAGATCGAAGGCAAGGGCAAC 2299932
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAG--TCGCTAAGGCGCTCGGACGCCCTG 6312
||||| || |||||| | |||| | | | || |||| || | || | ||||| |
Sbjct 2299933 GGTATCAAGACCGTCGTCACCAACCT--CAGCAGCGTCGCCCAGTCCCTGGCCCGCCCCG 2299990
Query 6313 CCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACA 6372
|||| | | || || || || | ||| || ||||||||||| | |||| |
Sbjct 2299991 GAGCCTATCTTATCAAGTACTTTGGCTTCGAGCTCGGCGCTCAGACCAACATTGACCCGC 2300050
Query 6373 AAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTG 6432
|||| |||| ||| | ||||| | || | | |||||||| ||||||| || |
Sbjct 2300051 CCGACGACCGCTGGATCATCAACGGCGCCCACGAGGCCGCCAAGCTCCAGGACTACCTCG 2300110
Query 6433 ACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486
||||||| || |||||||||||| || | | ||| | ||||| |||||||
Sbjct 2300111 ACGGCTTCATCTCCAAGTTTGTGCTTTGCAAGAAGTGCAAGAACCCCGAGACCG 2300164
>seq2
Length=4288194
Score = 95.1 bits (104), Expect = 8e-15
Identities = 161/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || ||||| |||||| || || || |||||| ||||| ||||| || |
Sbjct 329132 TACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGG 329073
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
||| || |||| || || || || || ||||| || ||||| || || || | |
Sbjct 329072 ACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCG 329013
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT-TCA 38267
||| ||| || ||||| || || ||| || || | | || || | || |||
Sbjct 329012 GGATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGTC-CGACGACTCA 328954
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || || ||||| || || ||||||||||| || || || || ||||||
Sbjct 328953 ACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903
>seq10
Length=919426
Score = 82.4 bits (90), Expect = 5e-11
Identities = 152/221 (69%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162
|||| ||||| || || ||||||||||| || || ||||| || |||| || ||
Sbjct 645302 CGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCG 645243
Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222
|| || | || || || || || || ||||| || || || | ||| | ||| || |||
Sbjct 645242 TCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTG 645183
Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATC--TCCACTTTCAACTTCTAATGTAA 38280
||| || || ||| ||||| | || || || | || || || || | || |
Sbjct 645182 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGAC--TCCACCTCAAGGGTGA 645125
Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321
|||| || ||||| | ||| || ||||| ||||||||| ||
Sbjct 645124 TAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGGTT 645084
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947093863606
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |