Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq4 87.8 2e-12 seq2 87.8 2e-12 >seq4 Length=2521912 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 ||| | || ||||||||||| || ||||| ||||||||| | |||||||| || ||| Sbjct 2220558 TTTTTCGGGCCGACGTACTACCAGCGACTGCGACACATGGTGGACGACAAGATCCATGCG 2220617 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || ||| ||| | ||| || | || ||||| | ||||| ||| | | Sbjct 2220618 CGGGCGCGCGGCCCTGTGCAGATCATGACGCGGCAGCCGGTCGAGGGTCGTGCGCGCGAC 2220677 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| || || || ||||||||||| || ||||| | | ||||||||| | Sbjct 2220678 GGTGGTCTTCGGTTCGGAGAGATGGAGCGTGATTGCATGATTGCGCACGGCGCGGCGGCC 2220737 Query 15581 TTCCTCAACGAGCGCATGTTT 15601 |||||||| |||||| ||||| Sbjct 2220738 TTCCTCAAGGAGCGCCTGTTT 2220758 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 15050 CCCG-AGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108 |||| ||||||||||||||||| || | | || ||||||||| || ||| Sbjct 2220221 CCCGCAGATTGGCGACAAGTTTGCGTCGCGACACGGACAGAAGGGCACGATTGGTGTGAC 2220280 Query 15109 TTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAA 15168 | || ||| |||||||| ||||| | | ||||| |||||||||||||||||||| Sbjct 2220281 GTACCGTTCGGAGGACATGCCGTTTACGGTGGAGGGCATCACGCCCGACATTATCATCAA 2220340 Query 15169 CCCCAACTGCATCCCGTCCCGCATGACCAT 15198 ||| || ||| ||||| || ||||| || Sbjct 2220341 CCCGCACGCCATTCCGTCGCGTATGACGAT 2220370 >seq2 Length=4288194 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/149 (75%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 15049 GCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCA-CGTGCGGCATG 15106 ||||||||| ||||||||||| | || | | ||| ||||||||| ||| |||||| Sbjct 3449879 GCCCGAGATCGGCGACAAGTTCTCGTCCCGCCACGGC-CAAAAGGGCGTCGT-CGGCATC 3449936 Query 15107 ATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATC 15166 || || |||||||||||||||||| ||| | ||| | |||||||| ||||| Sbjct 3449937 ATCGTCGAGCAGGAAGACATGCCCTTTTCCGACACCGGCCTCGTCCCCGACATCATCATG 3449996 Query 15167 AACCCCAACTGCATCCCGTCCCGCATGAC 15195 |||||| || | ||||||| || ||||| Sbjct 3449997 AACCCCCACGGTTTCCCGTCGCGTATGAC 3450025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611391801297600