Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_008187.1
Length=191100
Score E
Sequences producing significant alignments: (Bits) Value
seq4 87.8 2e-12
seq2 87.8 2e-12
>seq4
Length=2521912
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460
||| | || ||||||||||| || ||||| ||||||||| | |||||||| || |||
Sbjct 2220558 TTTTTCGGGCCGACGTACTACCAGCGACTGCGACACATGGTGGACGACAAGATCCATGCG 2220617
Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520
|| ||| ||| | ||| || | || ||||| | ||||| ||| | |
Sbjct 2220618 CGGGCGCGCGGCCCTGTGCAGATCATGACGCGGCAGCCGGTCGAGGGTCGTGCGCGCGAC 2220677
Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580
||||| || || || ||||||||||| || ||||| | | ||||||||| |
Sbjct 2220678 GGTGGTCTTCGGTTCGGAGAGATGGAGCGTGATTGCATGATTGCGCACGGCGCGGCGGCC 2220737
Query 15581 TTCCTCAACGAGCGCATGTTT 15601
|||||||| |||||| |||||
Sbjct 2220738 TTCCTCAAGGAGCGCCTGTTT 2220758
Score = 82.4 bits (90), Expect = 9e-11
Identities = 109/150 (73%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 15050 CCCG-AGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCGGCATGAT 15108
|||| ||||||||||||||||| || | | || ||||||||| || |||
Sbjct 2220221 CCCGCAGATTGGCGACAAGTTTGCGTCGCGACACGGACAGAAGGGCACGATTGGTGTGAC 2220280
Query 15109 TTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAA 15168
| || ||| |||||||| ||||| | | ||||| ||||||||||||||||||||
Sbjct 2220281 GTACCGTTCGGAGGACATGCCGTTTACGGTGGAGGGCATCACGCCCGACATTATCATCAA 2220340
Query 15169 CCCCAACTGCATCCCGTCCCGCATGACCAT 15198
||| || ||| ||||| || ||||| ||
Sbjct 2220341 CCCGCACGCCATTCCGTCGCGTATGACGAT 2220370
>seq2
Length=4288194
Score = 87.8 bits (96), Expect = 2e-12
Identities = 112/149 (75%), Gaps = 4/149 (3%)
Strand=Plus/Plus
Query 15049 GCCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCA-CGTGCGGCATG 15106
||||||||| ||||||||||| | || | | ||| ||||||||| ||| ||||||
Sbjct 3449879 GCCCGAGATCGGCGACAAGTTCTCGTCCCGCCACGGC-CAAAAGGGCGTCGT-CGGCATC 3449936
Query 15107 ATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATC 15166
|| || |||||||||||||||||| ||| | ||| | |||||||| |||||
Sbjct 3449937 ATCGTCGAGCAGGAAGACATGCCCTTTTCCGACACCGGCCTCGTCCCCGACATCATCATG 3449996
Query 15167 AACCCCAACTGCATCCCGTCCCGCATGAC 15195
|||||| || | ||||||| || |||||
Sbjct 3449997 AACCCCCACGGTTTCCCGTCGCGTATGAC 3450025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611391801297600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |