Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq2 147 3e-30
>seq2
Length=4288194
Score = 147 bits (162), Expect = 3e-30
Identities = 458/695 (66%), Gaps = 22/695 (3%)
Strand=Plus/Minus
Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077
|||| || | || |||| || ||||||| || |||||| |||| || ||| || |
Sbjct 3316507 CCAGGCCGGCGCACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCT 3316448
Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137
|||| || ||||| || ||||| ||||| | || ||||| | || | ||||| |
Sbjct 3316447 TCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCT 3316388
Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197
| || ||||| || || |||||| | | | ||| | |||||||| |||||||
Sbjct 3316387 TACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGT 3316328
Query 63198 ATATGGCCATAA--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63255
| ||| || || | || || || ||||| || ||||| || | ||| | || |||||
Sbjct 3316327 AGATG--CAGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTT 3316270
Query 63256 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315
||| | || | | ||| || || || || |||||||| || ||||| || | || ||
Sbjct 3316269 GTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTA 3316210
Query 63316 GCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63373
| || |||| ||||| | ||| | |||| || || || ||| | || |||
Sbjct 3316209 GGAGCCGGTGGCGCGAATGCGGTGGACATTCA--GACCGATGCCACCGGCCGTCTTGGAG 3316152
Query 63374 ATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 63432
|| | || || ||| || | ||| || ||||||||||| || || || ||| ||||||
Sbjct 3316151 ATCATGGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTC 3316093
Query 63433 AAGTAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAG 63488
| || || ||| ||||| | ||| | || || || || || || | || |
Sbjct 3316092 CACGAGGAAGCAGGAAGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAGAGCGTCG 3316037
Query 63489 GAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCT 63547
| || ||||| || || | || | || | |||| ||||| ||||| | | | ||
Sbjct 3316036 GCGAGGCGTGTGTGAAGAACTTGTTGGACATGTAG-TTGTATGTCTCGACAACGCGCTCC 3315978
Query 63548 ATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63606
| ||| || | || || || || |||||||| | ||||||||| || | || ||
Sbjct 3315977 ACATCGTCACCCCAG-ATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGAC 3315919
Query 63607 GATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63666
||||| || | || | | |||||| |||| || || || ||||| || |
Sbjct 3315918 AATCTTACCGTCGAGCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTATTG 3315859
Query 63667 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701
||| ||||| || ||||| | ||| ||||||
Sbjct 3315858 GTAGTTGAAGTCGCGGTCGTAGACAATGGCCGAGT 3315824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633631794069600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |