Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-30 >seq2 Length=4288194 Score = 147 bits (162), Expect = 3e-30 Identities = 458/695 (66%), Gaps = 22/695 (3%) Strand=Plus/Minus Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 |||| || | || |||| || ||||||| || |||||| |||| || ||| || | Sbjct 3316507 CCAGGCCGGCGCACTCATTGGGGCACATCAGCGTCCACTCGCCGTTGGTCTCCACACGCT 3316448 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 |||| || ||||| || ||||| ||||| | || ||||| | || | ||||| | Sbjct 3316447 TCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCACGGGCACGGACCTCCTCCT 3316388 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 | || ||||| || || |||||| | | | ||| | |||||||| ||||||| Sbjct 3316387 TACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACATCGGCGTGCCACGGCTCCAAGT 3316328 Query 63198 ATATGGCCATAA--CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63255 | ||| || || | || || || ||||| || ||||| || | ||| | || ||||| Sbjct 3316327 AGATG--CAGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCCACGTAGCGGGCCGTGTT 3316270 Query 63256 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315 ||| | || | | ||| || || || || |||||||| || ||||| || | || || Sbjct 3316269 GTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATGTGCCGTTGGTGCCGGCAATGTA 3316210 Query 63316 GCTTCCACTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63373 | || |||| ||||| | ||| | |||| || || || ||| | || ||| Sbjct 3316209 GGAGCCGGTGGCGCGAATGCGGTGGACATTCA--GACCGATGCCACCGGCCGTCTTGGAG 3316152 Query 63374 ATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 63432 || | || || ||| || | ||| || ||||||||||| || || || ||| |||||| Sbjct 3316151 ATCATGGCACA-CGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCGTCCTTCATGTC 3316093 Query 63433 AAGTAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTAG 63488 | || || ||| ||||| | ||| | || || || || || || | || | Sbjct 3316092 CACGAGGAAGCAGGAAGACA---GCTGA-GCCTGGGGCGTGCCGGCGTTGAAGAGCGTCG 3316037 Query 63489 GAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCT 63547 | || ||||| || || | || | || | |||| ||||| ||||| | | | || Sbjct 3316036 GCGAGGCGTGTGTGAAGAACTTGTTGGACATGTAG-TTGTATGTCTCGACAACGCGCTCC 3315978 Query 63548 ATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 63606 | ||| || | || || || || |||||||| | ||||||||| || | || || Sbjct 3315977 ACATCGTCACCCCAG-ATACCAACGGCCACACGCATGATCATGTGCTGCGGCCGCTCGAC 3315919 Query 63607 GATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 63666 ||||| || | || | | |||||| |||| || || || ||||| || | Sbjct 3315918 AATCTTACCGTCGAGCTTGAGGAGGTAGGAGCGCTCCAGGGTCTTGAAGCCAAAGTATTG 3315859 Query 63667 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 ||| ||||| || ||||| | ||| |||||| Sbjct 3315858 GTAGTTGAAGTCGCGGTCGTAGACAATGGCCGAGT 3315824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631794069600