Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq10 84.2 2e-11
seq3 82.4 7e-11
>seq10
Length=919426
Score = 84.2 bits (92), Expect = 2e-11
Identities = 154/224 (69%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054
||| ||||| || || || ||||| | || || || | ||||| | || ||||||||
Sbjct 645084 AACCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTC 645143
Query 25055 GTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
||| ||||| ||||| || || ||| || ||| ||||| || || ||||| ||
Sbjct 645144 GTCCGACACCATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCA 645201
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
||||| ||||| | || || || ||||| || | || || | || || || |||
Sbjct 645202 GACCAGCAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGAC 645261
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
||||| || || || || |||||| || | ||||| ||||
Sbjct 645262 TACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGGCT 645305
>seq3
Length=3655701
Score = 82.4 bits (90), Expect = 7e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || ||||| | || || || ||||||| |||| || ||||| || ||||| |||
Sbjct 2673781 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 2673722
Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127
|| | ||| || ||| ||||| || || || || |||||||| ||||| |
Sbjct 2673721 GACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTG 2673662
Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAA 25187
|| ||||||||||| || | || |||| || || || ||| ||||| || || ||
Sbjct 2673661 ATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGAAG 2673602
Query 25188 GAATCCACGCTACATTTAGTGCT 25210
|| || || || || | |||||
Sbjct 2673601 GAGTCGACCCTCCACCTGGTGCT 2673579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327862689190
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |