Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10 84.2 2e-11 seq3 82.4 7e-11 >seq10 Length=919426 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 ||| ||||| || || || ||||| | || || || | ||||| | || |||||||| Sbjct 645084 AACCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTC 645143 Query 25055 GTCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||| ||||| ||||| || || ||| || ||| ||||| || || ||||| || Sbjct 645144 GTCCGACACCATCGA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCA 645201 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 ||||| ||||| | || || || ||||| || | || || | || || || ||| Sbjct 645202 GACCAGCAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGAC 645261 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| || || || || |||||| || | ||||| |||| Sbjct 645262 TACAACATCCAGAAGGAGAGCACGCTCCACCTGGTGCTGCGGCT 645305 >seq3 Length=3655701 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | || || || ||||||| |||| || ||||| || ||||| ||| Sbjct 2673781 TTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 2673722 Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127 || | ||| || ||| ||||| || || || || |||||||| ||||| | Sbjct 2673721 GACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTG 2673662 Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAA 25187 || ||||||||||| || | || |||| || || || ||| ||||| || || || Sbjct 2673661 ATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGAAG 2673602 Query 25188 GAATCCACGCTACATTTAGTGCT 25210 || || || || || | ||||| Sbjct 2673601 GAGTCGACCCTCCACCTGGTGCT 2673579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327862689190