Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 132 4e-26 seq10 96.9 3e-15 seq3 86.0 5e-12 >seq2 Length=4288194 Score = 132 bits (146), Expect = 4e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| ||||| || || | | Sbjct 328220 ATGCAGATTTTCGTCAAGACGCTCACCGGCAAGACCATCACGCTTGAGGTCGAGTCTTCG 328279 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || ||||||||||| ||||| ||||| || Sbjct 328280 GATACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGACCAG 328339 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| || || ||||| ||| | ||||| ||||||| ||||||| |||||| Sbjct 328340 CAGCGTCTTATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAAC 328399 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||||||| Sbjct 328400 ATCCAGAAGGAATCCACC 328417 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || ||||||| || || || | || Sbjct 328448 ATGCAGATCTTCGTCAAGACGCTTACCGGCAAGACCATCACTCTCGAGGTCGAGTCGTCC 328507 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| ||||||||||| ||||| || || || Sbjct 328508 GACACGATCGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCGCCAGACCAG 328567 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| ||||||| |||| || |||||| Sbjct 328568 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAAC 328627 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 328628 ATCCAGAAGGAGTCTAC 328644 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || ||| | || || ||||||||| || | Sbjct 329132 ATGCAGATTTTCGTCAAGACCCTGACGGGCAAGACGATTACGCTGGAAGTGGAATCCTCG 329191 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 329192 GACACCATTGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCGCCAGACCAG 329251 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||||| || || ||| || | ||||| |||||| Sbjct 329252 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTACAAC 329311 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 329312 ATCCAGAAGGAGTCGAC 329328 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || ||| | || | || || || | | Sbjct 328676 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328735 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || |||||||||||||| || || || || || Sbjct 328736 GACACGATTGACAACGTCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 328795 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | |||||| ||||||| |||| || |||||| Sbjct 328796 CAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTCTCGGACTACAAC 328855 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 328856 ATCCAGAAGGAGTCTAC 328872 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || ||| | || | || || || | | Sbjct 328904 ATGCAAATCTTTGTCAAGACCTTGACGGGCAAGACGATTACGTTGGAGGTTGAGTCGTCG 328963 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || |||||||||||||| || || || || || Sbjct 328964 GACACGATTGACAACGTCAAGAGCAAGATCCAAGACAAGGAGGGCATCCCGCCAGACCAG 329023 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||||| || || ||| || | ||||| |||||| Sbjct 329024 CAGCGCCTGATTTTTGCGGGCAAGCAGTTGGAAGACGGCCGGACGCTGTCCGACTACAAC 329083 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | || || || |||| |||| || ||| Sbjct 329084 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTGCGTGGTGGT 329131 >seq10 Length=919426 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| ||||| | || Sbjct 645088 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCC 645147 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || || ||||||||||| ||||| || || || Sbjct 645148 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAG 645207 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | ||||| ||| ||| | ||||| |||||| Sbjct 645208 CAGCGCCTGATCTTCGCAGGCAAGCAGCTGGAGGACGGCCGGACCCTGTCCGACTACAAC 645267 Query 22399 ATTCAAAAAGA 22409 || || || || Sbjct 645268 ATCCAGAAGGA 645278 >seq3 Length=3655701 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || |||| || || || || || | || ||| | Sbjct 2673782 TTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 2673723 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || || || ||||||||||| || || || || || || || || Sbjct 2673722 CGACAACGTCAAGAGCAAGATCCAGGACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCT 2673663 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||||||||| ||| | |||||| ||| || | ||||| |||||||| || || Sbjct 2673662 GATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGGACGCTGTCCGACTACAACATCCAGAA 2673603 Query 22407 AGAATCCACC 22416 || || ||| Sbjct 2673602 GGAGTCGACC 2673593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727866998690