Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq3 105 1e-17 seq5 87.8 4e-12 seq7 86.0 1e-11 seq4 86.0 1e-11 seq1 86.0 1e-11 >seq3 Length=3655701 Score = 105 bits (116), Expect = 1e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| ||||||||||| || |||| ||||| ||||| ||| Sbjct 2961306 GGCGAGGACCTGTGCAACTGCACCTTCTCGCTCGCCTACGGTGCCAAGATCCTGCTCAAC 2961247 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 ||| |||| | | ||||| ||| | || || ||||| ||||||||| || || Sbjct 2961246 CAGACCAGCCTGCGCCTGAAGCGCGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCG 2961187 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||||||||||| |||| ||| |||| || || || || ||| Sbjct 2961186 GGCAAGTCCACGCTGATGCGCGCCATCAACAACGAGCAGGTGGAGGGCTTCCCCAA-GCA 2961128 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 ||||| | ||| || | || ||||||||| | ||||| Sbjct 2961127 GAGCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 2961086 Score = 87.8 bits (96), Expect = 4e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 280649 CAAGAATGTTGAGGACCATATGACCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTC 280708 |||| | |||||| ||| ||||| | || || ||| ||||| | | | ||||| Sbjct 2959957 CAAGGAGATTGAGGCCCACTGCACCAACTTCGGCCTCGACGCCGAGCTCATCTCCCACTC 2959898 Query 280709 TCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGT 280767 ||||| |||||||| || || || ||| ||||| |||| | | || |||| || Sbjct 2959897 GCGCATGCGCGGTCTGTCGGGTGGTCAGCGTGTCAAGGTTGTGCTGGCTGCGTGCTC-GT 2959839 Query 280768 GGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 |||| | || ||| |||| || ||||||||||| |||||||| |||||||| || Sbjct 2959838 GGCAGCGTCCCCACTTGATTGTGCTCGACGAGCCCACCAACTACCTGGACCGTGA 2959784 >seq5 Length=2216499 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| Sbjct 1718823 AGCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGAC 1718882 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 1718883 CCCCGCATCGGGC 1718895 >seq7 Length=1620073 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 403972 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 403913 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 403912 CCCGCATCGGGC 403901 >seq4 Length=2521912 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 1634054 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 1634113 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 1634114 CCCGCATCGGGC 1634125 >seq1 Length=5014741 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| | Sbjct 2564905 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 2564964 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 2564965 CCCGCATCGGGC 2564976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836457601866