Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 1e-17
seq5 87.8 4e-12
seq7 86.0 1e-11
seq4 86.0 1e-11
seq1 86.0 1e-11
>seq3
Length=3655701
Score = 105 bits (116), Expect = 1e-17
Identities = 158/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| ||||| |||| ||||||||||| || |||| ||||| ||||| |||
Sbjct 2961306 GGCGAGGACCTGTGCAACTGCACCTTCTCGCTCGCCTACGGTGCCAAGATCCTGCTCAAC 2961247
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
||| |||| | | ||||| ||| | || || ||||| ||||||||| || ||
Sbjct 2961246 CAGACCAGCCTGCGCCTGAAGCGCGGCCAGCGCTACGGTCTGTGCGGTCCCAACGGTTCG 2961187
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| ||| || ||||||||||| |||| ||| |||| || || || || |||
Sbjct 2961186 GGCAAGTCCACGCTGATGCGCGCCATCAACAACGAGCAGGTGGAGGGCTTCCCCAA-GCA 2961128
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
||||| | ||| || | || ||||||||| | |||||
Sbjct 2961127 GAGCGAGGTCAAGACCGTCTTCGTCGAGCACGACCTGGACTC 2961086
Score = 87.8 bits (96), Expect = 4e-12
Identities = 126/175 (72%), Gaps = 2/175 (1%)
Strand=Plus/Minus
Query 280649 CAAGAATGTTGAGGACCATATGACCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTC 280708
|||| | |||||| ||| ||||| | || || ||| ||||| | | | |||||
Sbjct 2959957 CAAGGAGATTGAGGCCCACTGCACCAACTTCGGCCTCGACGCCGAGCTCATCTCCCACTC 2959898
Query 280709 TCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA-GCTCTGT 280767
||||| |||||||| || || || ||| ||||| |||| | | || |||| ||
Sbjct 2959897 GCGCATGCGCGGTCTGTCGGGTGGTCAGCGTGTCAAGGTTGTGCTGGCTGCGTGCTC-GT 2959839
Query 280768 GGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|||| | || ||| |||| || ||||||||||| |||||||| |||||||| ||
Sbjct 2959838 GGCAGCGTCCCCACTTGATTGTGCTCGACGAGCCCACCAACTACCTGGACCGTGA 2959784
>seq5
Length=2216499
Score = 87.8 bits (96), Expect = 4e-12
Identities = 63/73 (86%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||||||||||| ||||||||||| ||||||||||||| ||| | ||||||||
Sbjct 1718823 AGCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGAC 1718882
Query 142563 CCCCACATCGGGC 142575
|||| ||||||||
Sbjct 1718883 CCCCGCATCGGGC 1718895
>seq7
Length=1620073
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 403972 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 403913
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 403912 CCCGCATCGGGC 403901
>seq4
Length=2521912
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 1634054 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 1634113
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 1634114 CCCGCATCGGGC 1634125
>seq1
Length=5014741
Score = 86.0 bits (94), Expect = 1e-11
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| |
Sbjct 2564905 GCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGACC 2564964
Query 142564 CCCACATCGGGC 142575
||| ||||||||
Sbjct 2564965 CCCGCATCGGGC 2564976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836457601866
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |