Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq2 95.1 1e-14
>seq2
Length=4288194
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215
|||||||| || | || || | || | || || || || || |||||||| ||| |
Sbjct 329358 CCGCCACGAAGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAC 329299
Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
| || || ||||| | || || || || | || || ||||| ||||| || |||
Sbjct 329298 AGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGA 329239
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
||||| || ||||| ||||| || | | |||| |||||| | |||||| ||
Sbjct 329238 ATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACT 329179
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|||| || | ||| ||||| ||||| || || || |||||||||||
Sbjct 329178 TCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || | || | || ||||| || || |||||||| |||
Sbjct 328449 ATACCACCACGGAGACGAAGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCG 328390
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || || || || || || |||||| |||| |||||||| ||||| ||
Sbjct 328389 GAGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGG 328330
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| || ||||| ||||| || | | |||| ||| || | || |||
Sbjct 328329 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCG 328270
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| || | || | || |||||||| || || || || ||||||||||||
Sbjct 328269 ACCTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAAATCTGCATG 328219
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | || || || || | ||| || || || ||||||||||| |||
Sbjct 329133 ATACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCG 329074
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || ||||| | || || || || | || || ||||| ||||| ||
Sbjct 329073 GACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGC 329014
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| ||||| || ||||| ||||| || | | |||| ||||| | || ||
Sbjct 329013 GGGATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGTCCGACGACTCA 328954
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| || | ||| ||||| |||| || || ||||| || ||||||
Sbjct 328953 ACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCATG 328903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420134266869912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |