Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 581 6e-161 seq1 239 8e-58 >seq2 Length=4288194 Score = 581 bits (644), Expect = 6e-161 Identities = 1281/1892 (68%), Gaps = 75/1892 (4%) Strand=Plus/Minus Query 243741 TGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGT 243799 ||||||||| ||| || | |||| |||| || | ||||||||||||||| |||||||| Sbjct 3317683 TGAACTGGATGGGCTGTG-CGGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTGAGG 3317625 Query 243800 CCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCG 243859 || |||| | || ||||||| ||| | |||||| | | ||||| Sbjct 3317624 CCCAGCTTCCAGCCCGTGAAGTGCATG--------CTTGTG-ATCTTGCCCAT--GGTCG 3317576 Query 243860 TCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCG 243919 | || | || || ||| || ||||| |||||||| |||| | || ||||| Sbjct 3317575 GC-TCACGCATGTGGATGTTCAGCGACTGCGACTGGTCGATAAAGGCACCACGGTCTGCA 3317517 Query 243920 GCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAG 243978 ||||| | | |||| ||| || ||||| || |||||||||| | || ||||| Sbjct 3317516 GCCATCTGCACAATCGTCCG-CTGCGAGATCTCCCACACCGTCTTGTACAGGGCCTTGAT 3317458 Query 243979 GTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036 || | |||| || | |||||||| | ||| || || | | |||| || | Sbjct 3317457 GTCGGCCGGGATG--TTGGGAATGTTCTGGATCGAACCGTTCTCCGCAATGATGCGGTTC 3317400 Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACC 244096 |||||| || |||||| |||| | |||| ||| || ||| | ||| ||| Sbjct 3317399 TTCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACC 3317340 Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| ||||| || | |||||| || ||| ||||| |||| || ||||||| | Sbjct 3317339 ACCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGGCTCGAAG 3317280 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 | ||| |||||||||| ||||||| ||| ||| |||||||| |||| |||||||||| Sbjct 3317279 CACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGA 3317220 Query 244217 CTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCC 244276 ||||| | ||| |||||| || ||| || | ||| || ||||||||||| | || Sbjct 3317219 CTGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAGTCCCACAGGTCC 3317160 Query 244277 GAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGG 244336 ||| | | || ||| |||||||||| |||||| | |||| || || Sbjct 3317159 GAGGG--CGTCACGT-------CCCACATGTCGGGCTGCAGAATGCCCTGCGACACAGGA 3317109 Query 244337 CTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC-GTCGAG 244395 |||||| || || |||||| ||| ||| || ||||||| || ||| ||| || Sbjct 3317108 GAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGACTCCGTC-AG 3317050 Query 244396 GGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT 244455 || |||| ||||||||||||||||||| |||||||| ||| |||| | | Sbjct 3317049 CGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTGCCTCGGGCGACTC 3316990 Query 244456 GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGG 244515 ||||| |||| || | || |||| |||| ||||| |||||||| || | || ||||| Sbjct 3316989 AAAGGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAGACCAATGGG 3316930 Query 244516 TCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCAC 244575 | ||| ||| ||||| | || |||||||||||||| |||| |||| || | Sbjct 3316929 CCGGTGGCGCATGTTGCTGTTTCGTGCCTCGGGCACGGGGTAGTAGTTCACGTCAATGAT 3316870 Query 244576 CTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTAC 244633 ||||||||||||| | || |||| ||||||| |||| |||| ||||| ||| Sbjct 3316869 GCGGTTGAGGTTGCGGACAACCAACTGCGT--GACGTCGTGCAGCCGCTGGAAGTCATAC 3316812 Query 244634 TCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTGAGGGCGACGCTGGCCAG 244692 || |||| | || || || || ||| || || | ||||| Sbjct 3316811 -------GA--CTCG----TTGTTATAGTCGACGAACGACGGAAGAGCCAGCGAGGCCAA 3316765 Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752 |||||| ||||||||||| |||| | ||||| |||||||| ||||| ||||| Sbjct 3316764 GTTGCACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTCGA 3316705 Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812 || |||||||||||||| || || ||| |||| ||||||| |||||||||||| Sbjct 3316704 GCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAG 3316645 Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGC 244872 |||||| || || ||||| ||| || | || | | || ||| || | | || Sbjct 3316644 CATGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGC 3316585 Query 244873 CTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTC 244932 ||||||| || | ||| | |||||| |||||| |||||| ||||| ||||| Sbjct 3316584 CTTGACCTTCTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCAAACTC 3316525 Query 244933 GGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCC 244992 ||| || || | ||||||| |||| |||||||| || |||||||||| Sbjct 3316524 CTCGCCGTAGCAATCCGCCAGGCCGGCGCACTCATTGGGGCACATCAGCGTCCACTCGCC 3316465 Query 244993 GCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCT 245052 | | || || | || |||||| || |||||||||||||| || |||| || || | Sbjct 3316464 GTTGGTCTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCACG 3316405 Query 245053 GGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGAC 245112 || | ||| ||| || |||||||| ||| |||| || |||||||| ||| | Sbjct 3316404 GGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACATCGGC 3316345 Query 245113 GTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 |||||| ||||||| ||||| || ||| ||||| ||||||||||| |||||||||| Sbjct 3316344 GTGCCACGGCTCCAAGTAGATGCAGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCCA- 3316286 Query 245173 CATCCTCTCGAG-CGCGTTG---AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 | | || | || |||| |||| || || |||| | |||||||| || || Sbjct 3316285 ---CGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATGTGC 3316229 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCT 245284 |||||||||| ||||||| ||| || | | | ||| | ||||||| || Sbjct 3316228 CGTTGGTGCCGGCAATGTAGGAGCCGGTGGC---GCGAATGC-GGTGGACATTCAGACCG 3316173 Query 245285 AGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCC 245344 | || ||||| ||||||||| | ||| || |||||| ||||| |||||||| Sbjct 3316172 ATGCCACCGGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTCA 3316113 Query 245345 ATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCAC 245404 |||||||| |||||||| | || |||||||| |||||||| | || ||| ||| Sbjct 3316112 ATGCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCCG 3316053 Query 245405 GAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTC 245464 | |||||| || || || |||||| || ||| | | | || | | | ||| ||| Sbjct 3316052 GCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTATGTC 3315993 Query 245465 TGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGT 245522 | || || ||| || | | ||| || ||| | ||| ||| | ||||| ||| Sbjct 3315992 TCGA-CAACGCGCTCCACATCGTCACCCCAGATACCAACGGC-CACACGCATGATCATGT 3315935 Query 245523 GCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCG 245579 |||| ||| |||| || || ||| | |||||| | |||||||||||| || | Sbjct 3315934 GCTGCGGCCGCTCGACAATCTTACCGTCGAG---CTTGAGGAGGTAGGAGCGCTCCAGGG 3315878 Query 245580 TCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 ||||||| |||||||| |||| |||||| Sbjct 3315877 TCTTGAAGCCAAAGTATTGGTAGTTGAAGTCG 3315846 >seq1 Length=5014741 Score = 239 bits (264), Expect = 8e-58 Identities = 377/532 (71%), Gaps = 41/532 (8%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT---CGA----GAGTCCCGA 42685 ||||||||| |||||||| || ||||| || |||||| ||| |||||| Sbjct 1638354 CCCTGCATCCGCAAGAAGGCCGAGTGGGCCCTGCGCTGGATTTCCGACAAGGAGTCC--- 1638410 Query 42686 CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGG 42745 || || | || | || || || ||| | |||||||||||||| |||||| || Sbjct 1638411 ----ACCTTTGCGCAGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGG 1638466 Query 42746 CGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTC 42803 ||||||| | |||||||||||||||||| || ||| | |||||| || || || ||| Sbjct 1638467 CGCCTTCTCGTCCATCTTCTGGCTCAAGAAG--CGTGGCCTGATGCCTGGTCTGACTTTC 1638524 Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || || || || || | | |||||||| ||||| | |||||||||||||| |||||| Sbjct 1638525 TCCAATGAGCTGATTTCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTC 1638584 Query 42864 TCGAGCCACCTCAGGCACAAGCCCTCG---AAGGAGCGGGTCCGGGCCATCATCACGGAG 42920 || |||||| | |||| | | || ||| || ||| || ||| ||| || Sbjct 1638585 TC---CCACCT---GAACAACCGCCCGAGCAAGCAGATCATCCAGGACATTATCGTCGAT 1638638 Query 42921 GCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCAT 42979 ||||| |||| ||| ||||||| | || || | |||||| ||| | || | ||||| Sbjct 1638639 GCCGTCAAGATTGAGCAGGAGTTTTTGACCGAGGCCCTGCCCTGTG-CTCTTCTGGGCAT 1638697 Query 42980 GAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGAT 43039 |||| | ||||||| ||||||| ||| ||| ||||||| ||| || | | Sbjct 1638698 GAACGCCACCCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTGCT------GGT 1638751 Query 43040 GGGTCTCAGC--CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACAT 43093 | |||| || || | ||||| | | | ||||| ||||||||||||||||| Sbjct 1638752 CGCTCTCGGCAACGACAAGGTCTACCGCTCCACCAATCCCTTTGACTTTATGGAGAACAT 1638811 Query 43094 CTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| ||| |||||||||||||| |||||||||||||||| |||||||||| Sbjct 1638812 CTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAG 1638863 Score = 134 bits (148), Expect = 3e-26 Identities = 234/336 (70%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||| || || |||||| |||||||||||||||||| Sbjct 1637953 ATCTGGCAAATGTACAAGAAGCACGAGGCTTCTTTCTGGACGGCCGAGGAGATTGACCTG 1638012 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAG---TTTTTCCTCAA 42415 |||||||| | || |||| | || | |||| |||| || || ||| || Sbjct 1638013 TCCAAGGACCTGCACGACTGGCACA-ACCGCCTGAACGACGACGAGCGCTTCTTCATCTC 1638071 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || ||||||||||||||||| || ||||| ||||| |||||||| | | | Sbjct 1638072 CCACATCCTCGCCTTCTTCGCCGCCTCGGATGGCATCGTCAACGAGAACCTCGTCGAGCG 1638131 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| ||||| ||| ||||| |||||||| |||||||||||||| || Sbjct 1638132 CTTCAGCGCCGAGGTCCAGGTGCCCGAGGCCCGCTGCTTTTACGGCTTCCAGATCATGAT 1638191 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| | ||||||| |||| |||||| ||| || Sbjct 1638192 GGAGAACATTCACTCCGAGACCTACTC---TCTGCTCATTGACACCTACATCAAGGAGCC 1638248 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 | ||||| | | || ||||| ||||| || || Sbjct 1638249 CAAGGAGCGCACCCACCTCTTCAACGCCATTGATAC 1638284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338893089760