Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2 581 6e-161
seq1 239 8e-58
>seq2
Length=4288194
Score = 581 bits (644), Expect = 6e-161
Identities = 1281/1892 (68%), Gaps = 75/1892 (4%)
Strand=Plus/Minus
Query 243741 TGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGT 243799
||||||||| ||| || | |||| |||| || | ||||||||||||||| ||||||||
Sbjct 3317683 TGAACTGGATGGGCTGTG-CGGCAGCCTGCGTGCGCAGGTAGTACATGCCCGTCTTGAGG 3317625
Query 243800 CCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCG 243859
|| |||| | || ||||||| ||| | |||||| | | |||||
Sbjct 3317624 CCCAGCTTCCAGCCCGTGAAGTGCATG--------CTTGTG-ATCTTGCCCAT--GGTCG 3317576
Query 243860 TCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCG 243919
| || | || || ||| || ||||| |||||||| |||| | || |||||
Sbjct 3317575 GC-TCACGCATGTGGATGTTCAGCGACTGCGACTGGTCGATAAAGGCACCACGGTCTGCA 3317517
Query 243920 GCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAG 243978
||||| | | |||| ||| || ||||| || |||||||||| | || |||||
Sbjct 3317516 GCCATCTGCACAATCGTCCG-CTGCGAGATCTCCCACACCGTCTTGTACAGGGCCTTGAT 3317458
Query 243979 GTGCTCGGGGAACCCTTCG--ATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTG 244036
|| | |||| || | |||||||| | ||| || || | | |||| || |
Sbjct 3317457 GTCGGCCGGGATG--TTGGGAATGTTCTGGATCGAACCGTTCTCCGCAATGATGCGGTTC 3317400
Query 244037 CGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTCACC 244096
|||||| || |||||| |||| | |||| ||| || ||| | ||| |||
Sbjct 3317399 TTCATGTTGTCCGACCACAGACCCATGTCGACCAGGTCCTTGAGCAGCCACGGGTTGACC 3317340
Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156
||||| ||||| || | |||||| || ||| ||||| |||| || ||||||| |
Sbjct 3317339 ACCTGGAACTCGCCGGCCAGCACACGCCGCGAGTAGATGTTGGACGTGTATGGCTCGAAG 3317280
Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216
| ||| |||||||||| ||||||| ||| ||| |||||||| |||| ||||||||||
Sbjct 3317279 CACTCGTTGTTGCCCAGAATCTGCGACGTCGACGCCGTCGGCATCGGCGCCACCAGCAGA 3317220
Query 244217 CTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCC 244276
||||| | ||| |||||| || ||| || | ||| || ||||||||||| | ||
Sbjct 3317219 CTGTTGCGCACACCGTGCTCCTTGATCTTCAGCCGCAGCGAGTCCCAGTCCCACAGGTCC 3317160
Query 244277 GAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGG 244336
||| | | || ||| |||||||||| |||||| | |||| || ||
Sbjct 3317159 GAGGG--CGTCACGT-------CCCACATGTCGGGCTGCAGAATGCCCTGCGACACAGGA 3317109
Query 244337 CTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC-GTCGAG 244395
|||||| || || |||||| ||| ||| || ||||||| || ||| ||| ||
Sbjct 3317108 GAGCCCTCATATGTTTGGTAGGTACCCTCGATCTTGGCCAGCGCGCACGACTCCGTC-AG 3317050
Query 244396 GGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT 244455
|| |||| ||||||||||||||||||| |||||||| ||| |||| | |
Sbjct 3317049 CGCCGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTCAGCAGGCGTGCCTCGGGCGACTC 3316990
Query 244456 GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGG 244515
||||| |||| || | || |||| |||| ||||| |||||||| || | || |||||
Sbjct 3316989 AAAGGGCATGCGCAGCGCCAGGAAGGCGTCTGCCAGACCCTGCACACCCAGACCAATGGG 3316930
Query 244516 TCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCAC 244575
| ||| ||| ||||| | || |||||||||||||| |||| |||| || |
Sbjct 3316929 CCGGTGGCGCATGTTGCTGTTTCGTGCCTCGGGCACGGGGTAGTAGTTCACGTCAATGAT 3316870
Query 244576 CTTGTTGAGGTTGCGGGTGATCA--TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTAC 244633
||||||||||||| | || |||| ||||||| |||| |||| ||||| |||
Sbjct 3316869 GCGGTTGAGGTTGCGGACAACCAACTGCGT--GACGTCGTGCAGCCGCTGGAAGTCATAC 3316812
Query 244634 TCGTAGGGATCCTCGGCGATGGTGATCCTC-ACAAACTCGTTGAGGGCGACGCTGGCCAG 244692
|| |||| | || || || || ||| || || | |||||
Sbjct 3316811 -------GA--CTCG----TTGTTATAGTCGACGAACGACGGAAGAGCCAGCGAGGCCAA 3316765
Query 244693 GTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACT 244752
|||||| ||||||||||| |||| | ||||| |||||||| ||||| |||||
Sbjct 3316764 GTTGCACACGGCCACCTCGTCCGGCGCCGAGTACTCCACAATCTCCGTGCACAGGTTCGA 3316705
Query 244753 GCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAG 244812
|| |||||||||||||| || || ||| |||| ||||||| ||||||||||||
Sbjct 3316704 GCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAG 3316645
Query 244813 CATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGC 244872
|||||| || || ||||| ||| || | || | | || ||| || | | ||
Sbjct 3316644 CATGAACGGGTTGCCCGTCTCCGTCTGCGCCTCCAGAATGGCGTACCACAGCTTCTGGGC 3316585
Query 244873 CTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTC 244932
||||||| || | ||| | |||||| |||||| |||||| ||||| |||||
Sbjct 3316584 CTTGACCTTCTTACGACCACGGCCCTCGCTCTCGTACTTCTCGTACAGCGCCTCAAACTC 3316525
Query 244933 GGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCC 244992
||| || || | ||||||| |||| |||||||| || ||||||||||
Sbjct 3316524 CTCGCCGTAGCAATCCGCCAGGCCGGCGCACTCATTGGGGCACATCAGCGTCCACTCGCC 3316465
Query 244993 GCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCT 245052
| | || || | || |||||| || |||||||||||||| || |||| || || |
Sbjct 3316464 GTTGGTCTCCACACGCTTCATGAACAGATCGGGGATCCAGAGAGCGAGGAAAAGATCACG 3316405
Query 245053 GGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGAC 245112
|| | ||| ||| || |||||||| ||| |||| || |||||||| ||| |
Sbjct 3316404 GGCACGGACCTCCTCCTTACCCTGGTTCTTCCGCAGGTCCAGGAACTCAAAGACATCGGC 3316345
Query 245113 GTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172
|||||| ||||||| ||||| || ||| ||||| ||||||||||| ||||||||||
Sbjct 3316344 GTGCCACGGCTCCAAGTAGATGCAGAAGGCACCGGGGCGCTTGTTGCCACCCTGGTCCA- 3316286
Query 245173 CATCCTCTCGAG-CGCGTTG---AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228
| | || | || |||| |||| || || |||| | |||||||| || ||
Sbjct 3316285 ---CGTAGCGGGCCGTGTTGTTAAAGACACGAAGCATAGGGATGATGCCGTTGGATGTGC 3316229
Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT----GCCT 245284
|||||||||| ||||||| ||| || | | | ||| | ||||||| ||
Sbjct 3316228 CGTTGGTGCCGGCAATGTAGGAGCCGGTGGC---GCGAATGC-GGTGGACATTCAGACCG 3316173
Query 245285 AGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCC 245344
| || ||||| ||||||||| | ||| || |||||| ||||| ||||||||
Sbjct 3316172 ATGCCACCGGCCGTCTTGGAGATCATGGCACACGTCTTGAGCGTGTCGTAGATGCCCTCA 3316113
Query 245345 ATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCAC 245404
|||||||| |||||||| | || |||||||| |||||||| | || ||| |||
Sbjct 3316112 ATGCTGTCGTCCTTCATGTCCACGAGGAAGCAGGAAGACAGCTGAGCCTGGGGCGTGCCG 3316053
Query 245405 GAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTC 245464
| |||||| || || || |||||| || ||| | | | || | | | ||| |||
Sbjct 3316052 GCGTTGAAGAGCGTCGGCGAGGCGTGTGTGAAGAACTTGTTGGACATGTAGTTGTATGTC 3315993
Query 245465 TGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGT 245522
| || || ||| || | | ||| || ||| | ||| ||| | ||||| |||
Sbjct 3315992 TCGA-CAACGCGCTCCACATCGTCACCCCAGATACCAACGGC-CACACGCATGATCATGT 3315935
Query 245523 GCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCG 245579
|||| ||| |||| || || ||| | |||||| | |||||||||||| || |
Sbjct 3315934 GCTGCGGCCGCTCGACAATCTTACCGTCGAG---CTTGAGGAGGTAGGAGCGCTCCAGGG 3315878
Query 245580 TCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611
||||||| |||||||| |||| ||||||
Sbjct 3315877 TCTTGAAGCCAAAGTATTGGTAGTTGAAGTCG 3315846
>seq1
Length=5014741
Score = 239 bits (264), Expect = 8e-58
Identities = 377/532 (71%), Gaps = 41/532 (8%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGAT---CGA----GAGTCCCGA 42685
||||||||| |||||||| || ||||| || |||||| ||| ||||||
Sbjct 1638354 CCCTGCATCCGCAAGAAGGCCGAGTGGGCCCTGCGCTGGATTTCCGACAAGGAGTCC--- 1638410
Query 42686 CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGG 42745
|| || | || | || || || ||| | |||||||||||||| |||||| ||
Sbjct 1638411 ----ACCTTTGCGCAGCGCCTCGTGGCATTTGCTGCCGTCGAGGGCATTTTCTTCAGCGG 1638466
Query 42746 CGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTC 42803
||||||| | |||||||||||||||||| || ||| | |||||| || || || |||
Sbjct 1638467 CGCCTTCTCGTCCATCTTCTGGCTCAAGAAG--CGTGGCCTGATGCCTGGTCTGACTTTC 1638524
Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863
|| || || || || | | |||||||| ||||| | |||||||||||||| ||||||
Sbjct 1638525 TCCAATGAGCTGATTTCCCGCGACGAGGGCCTGCACACCGACTTTGCCTGCCTGCTGTTC 1638584
Query 42864 TCGAGCCACCTCAGGCACAAGCCCTCG---AAGGAGCGGGTCCGGGCCATCATCACGGAG 42920
|| |||||| | |||| | | || ||| || ||| || ||| ||| ||
Sbjct 1638585 TC---CCACCT---GAACAACCGCCCGAGCAAGCAGATCATCCAGGACATTATCGTCGAT 1638638
Query 42921 GCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCAT 42979
||||| |||| ||| ||||||| | || || | |||||| ||| | || | |||||
Sbjct 1638639 GCCGTCAAGATTGAGCAGGAGTTTTTGACCGAGGCCCTGCCCTGTG-CTCTTCTGGGCAT 1638697
Query 42980 GAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGAT 43039
|||| | ||||||| ||||||| ||| ||| ||||||| ||| || | |
Sbjct 1638698 GAACGCCACCCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTGCT------GGT 1638751
Query 43040 GGGTCTCAGC--CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACAT 43093
| |||| || || | ||||| | | | ||||| |||||||||||||||||
Sbjct 1638752 CGCTCTCGGCAACGACAAGGTCTACCGCTCCACCAATCCCTTTGACTTTATGGAGAACAT 1638811
Query 43094 CTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145
||| ||| |||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1638812 CTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAG 1638863
Score = 134 bits (148), Expect = 3e-26
Identities = 234/336 (70%), Gaps = 11/336 (3%)
Strand=Plus/Plus
Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359
|||||| |||||||||||| || || |||||| ||||||||||||||||||
Sbjct 1637953 ATCTGGCAAATGTACAAGAAGCACGAGGCTTCTTTCTGGACGGCCGAGGAGATTGACCTG 1638012
Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAG---TTTTTCCTCAA 42415
|||||||| | || |||| | || | |||| |||| || || ||| ||
Sbjct 1638013 TCCAAGGACCTGCACGACTGGCACA-ACCGCCTGAACGACGACGAGCGCTTCTTCATCTC 1638071
Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475
|||| || ||||||||||||||||| || ||||| ||||| |||||||| | | |
Sbjct 1638072 CCACATCCTCGCCTTCTTCGCCGCCTCGGATGGCATCGTCAACGAGAACCTCGTCGAGCG 1638131
Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535
|||| ||||| ||| ||||| |||||||| |||||||||||||| ||
Sbjct 1638132 CTTCAGCGCCGAGGTCCAGGTGCCCGAGGCCCGCTGCTTTTACGGCTTCCAGATCATGAT 1638191
Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592
|||||| | ||||| ||| ||| | ||||||| |||| |||||| ||| ||
Sbjct 1638192 GGAGAACATTCACTCCGAGACCTACTC---TCTGCTCATTGACACCTACATCAAGGAGCC 1638248
Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628
| ||||| | | || ||||| ||||| || ||
Sbjct 1638249 CAAGGAGCGCACCCACCTCTTCAACGCCATTGATAC 1638284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944338893089760
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