Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq10 102 6e-17 seq2 100 2e-16 seq3 86.0 5e-12 >seq10 Length=919426 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||||||||||||| || ||||||||||||||||| |||||||| || | || || Sbjct 645305 AGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGACAGGGTCCGG 645246 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| |||||||| || || |||||||||||||| || || | || ||| Sbjct 645245 CCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGGTCTGGGGGAATGCCCTCC 645186 Query 34030 TTGTCC 34035 |||||| Sbjct 645185 TTGTCC 645180 >seq2 Length=4288194 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| |||||||||| || ||||| |||||||||||||||||| || | Sbjct 329131 ACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 329072 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| ||||| |||||||| ||||| |||||||||||||| || ||| Sbjct 329071 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGG 329012 Query 34020 CACGCTCTCTTTGTC 34034 | || ||| ||||| Sbjct 329011 GATGCCCTCCTTGTC 328997 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||||||||| || || || ||||||||| |||||||| || | || || Sbjct 329349 AGACGCAGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGG 329290 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| |||||||| ||||| |||||||||||||| || ||| | || ||| Sbjct 329289 CCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCC 329230 Query 34030 TTGTCC 34035 |||||| Sbjct 329229 TTGTCC 329224 >seq3 Length=3655701 Score = 86.0 bits (94), Expect = 5e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951 |||| || ||| || | ||| || |||||||| || || || ||||||||| |||||| Sbjct 2673556 CAAT-GATACCACCACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTG 2673614 Query 33952 TAATCTGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGA 34011 || || | || || | || || | |||||||||||||| |||||||||||||| Sbjct 2673615 TAGTCGGACAGCGTCCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGG 2673674 Query 34012 TCCACCGGCACGCTCTCTTTGTCC 34035 || ||| | || ||| |||||| Sbjct 2673675 TCAGGCGGGATGCCCTCCTTGTCC 2673698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397062274180852