Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 140 8e-28 seq10 132 1e-25 seq1 123 6e-23 >seq2 Length=4288194 Score = 140 bits (154), Expect = 8e-28 Identities = 172/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || || || | ||| ||| || ||||| || ||||||| | Sbjct 328446 CCACCACGGAGACGAAGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 328387 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || |||||||| |||||||| || || ||| Sbjct 328386 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGG---TCGGGG 328330 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || ||||| || || | ||| || || Sbjct 328329 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCG 328270 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || |||||||| ||||| ||||| || ||||||||||| |||||||| ||| Sbjct 328269 ACCTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAAATCTGCATGATG 328216 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||||| || |||||||| || || || || || || Sbjct 329322 TCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAA 329263 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||| ||||| || ||||| || || || || |||||||| |||| || ||| Sbjct 329262 ATCAGGCGCTGCTGG---TCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACG 329206 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || ||||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 329205 TTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTG 329146 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 329145 ACGAAAATCTGCAT 329132 Score = 105 bits (116), Expect = 2e-17 Identities = 168/236 (71%), Gaps = 9/236 (4%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || || || | ||| || || ||||| || |||| Sbjct 328678 CATG-CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGT 328620 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | ||| ||||| || || || | || || || || |||||||| ||||| || | Sbjct 328619 CCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGG---T 328563 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTC 288417 |||| || || || || ||||| || || ||| || || || || || | ||| | Sbjct 328562 CTGGCGGAATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATCGTGTCGGAC 328504 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 328503 GACTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448 >seq10 Length=919426 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || || || | |||||| || || ||||| || ||||||| Sbjct 645314 CCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 645255 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || |||||||||||||| ||||| || |||||| Sbjct 645254 AGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGG---TCTGGG 645198 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || | || || || || || | ||| ||| || Sbjct 645197 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCC 645138 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 645137 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088 >seq1 Length=5014741 Score = 123 bits (136), Expect = 6e-23 Identities = 284/416 (68%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 |||| ||||||||||| | || |||||| | || || | || ||| |||||||| | Sbjct 3459060 ACGACGGGCGTGATGAATTCCTGGAAGAACTCAGGGATGGCCAGCAGAG-AGGGAAACTG 3459002 Query 326024 --CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 326081 || | |||||||| |||| ||||| || ||| | ||||| |||| |||| Sbjct 3459001 GACT-TCCAAAAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGG 3458943 Query 326082 TCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG-GTT 326140 ||||||||||| |||||| || || || ||||| ||||||| | | | | Sbjct 3458942 CCATGATCATCAAATGACCATACCGCAGGCTCTTGGTGTCGGTGTACACCTGTTTGTGCT 3458883 Query 326141 TGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CCA 326198 | ||| || | || | | |||| | ||| ||| || | |||||||||||| || | | | Sbjct 3458882 TCAAGCCCAAAAACT-GCTTGATGTTCTG-GATCTCCTTGTTCTTCGTGAT-CTGGTCGA 3458826 Query 326199 CGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGC 326258 ||| |||||||| || ||||| ||||| ||||| || |||||||| ||| | ||| Sbjct 3458825 TGGAGGCATCGCGCACATTCAAAAGTTTACCACGCAGCGGGAACACACCAATGCGGTCGG 3458766 Query 326259 GACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAA 326318 | ||| ||||| | || || | || || ||||| || ||||||||||| | Sbjct 3458765 GGTCGAGCACGGCACGGCCAGCAACAGCCAGACCACGGGCGGAGTCACCCTCCGTCAGGA 3458706 Query 326319 TGAGAGTGCACATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTG 326374 | || |||||| | || || || || || ||| | | |||||| ||| ||| Sbjct 3458705 TCAGCGTGCACTCGTGGCCGTGCTTGGTACCTGCCAAGTTGGCATCGACGAGCTTG 3458650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654007027628