Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 8e-28
seq10 132 1e-25
seq1 123 6e-23
>seq2
Length=4288194
Score = 140 bits (154), Expect = 8e-28
Identities = 172/234 (74%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || || || | ||| ||| || ||||| || ||||||| |
Sbjct 328446 CCACCACGGAGACGAAGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 328387
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || |||||||| |||||||| || || |||
Sbjct 328386 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGG---TCGGGG 328330
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || |||||||| || | || ||||| || || | ||| || ||
Sbjct 328329 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCG 328270
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || |||||||| ||||| ||||| || ||||||||||| |||||||| |||
Sbjct 328269 ACCTCAAGCGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAAATCTGCATGATG 328216
Score = 125 bits (138), Expect = 2e-23
Identities = 145/194 (75%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| ||||| || |||||||| || || || || || ||
Sbjct 329322 TCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAA 329263
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||| ||||| || ||||| || || || || |||||||| |||| || |||
Sbjct 329262 ATCAGGCGCTGCTGG---TCTGGCGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACG 329206
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | || ||||| ||||| ||||| |||||||| || ||||| ||||||
Sbjct 329205 TTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTG 329146
Query 288460 ACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 329145 ACGAAAATCTGCAT 329132
Score = 105 bits (116), Expect = 2e-17
Identities = 168/236 (71%), Gaps = 9/236 (4%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || || | || || || || | ||| || || ||||| || ||||
Sbjct 328678 CATG-CCACCACGCAGGCGGAGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGT 328620
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||| ||||| || || || | || || || || |||||||| ||||| || |
Sbjct 328619 CCGAGAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGG---T 328563
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTC 288417
|||| || || || || ||||| || || ||| || || || || || | ||| |
Sbjct 328562 CTGGCGGAATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATCGTGTCGGAC 328504
Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 328503 GACTCGACCTCGAGAGTGATGGTCTTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448
>seq10
Length=919426
Score = 132 bits (146), Expect = 1e-25
Identities = 168/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | || || || || | |||||| || || ||||| || |||||||
Sbjct 645314 CCACCACGGAGCCGCAGCACCAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCGGAC 645255
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || ||||| || | || || |||||||||||||| ||||| || ||||||
Sbjct 645254 AGGGTCCGGCCGTCCTCCAGCTGCTTGCCTGCGAAGATCAGGCGCTGCTGG---TCTGGG 645198
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || |||||||| || | || || || || || | ||| ||| ||
Sbjct 645197 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCC 645138
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| || || || ||||||||||| ||||||||
Sbjct 645137 ACCTCAAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 645088
>seq1
Length=5014741
Score = 123 bits (136), Expect = 6e-23
Identities = 284/416 (68%), Gaps = 10/416 (2%)
Strand=Plus/Minus
Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023
|||| ||||||||||| | || |||||| | || || | || ||| |||||||| |
Sbjct 3459060 ACGACGGGCGTGATGAATTCCTGGAAGAACTCAGGGATGGCCAGCAGAG-AGGGAAACTG 3459002
Query 326024 --CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 326081
|| | |||||||| |||| ||||| || ||| | ||||| |||| ||||
Sbjct 3459001 GACT-TCCAAAAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGG 3458943
Query 326082 TCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG-GTT 326140
||||||||||| |||||| || || || ||||| ||||||| | | | |
Sbjct 3458942 CCATGATCATCAAATGACCATACCGCAGGCTCTTGGTGTCGGTGTACACCTGTTTGTGCT 3458883
Query 326141 TGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CCA 326198
| ||| || | || | | |||| | ||| ||| || | |||||||||||| || | | |
Sbjct 3458882 TCAAGCCCAAAAACT-GCTTGATGTTCTG-GATCTCCTTGTTCTTCGTGAT-CTGGTCGA 3458826
Query 326199 CGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGC 326258
||| |||||||| || ||||| ||||| ||||| || |||||||| ||| | |||
Sbjct 3458825 TGGAGGCATCGCGCACATTCAAAAGTTTACCACGCAGCGGGAACACACCAATGCGGTCGG 3458766
Query 326259 GACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAA 326318
| ||| ||||| | || || | || || ||||| || ||||||||||| |
Sbjct 3458765 GGTCGAGCACGGCACGGCCAGCAACAGCCAGACCACGGGCGGAGTCACCCTCCGTCAGGA 3458706
Query 326319 TGAGAGTGCACATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTG 326374
| || |||||| | || || || || || ||| | | |||||| ||| |||
Sbjct 3458705 TCAGCGTGCACTCGTGGCCGTGCTTGGTACCTGCCAAGTTGGCATCGACGAGCTTG 3458650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179654007027628
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |