Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1 129 1e-24 >seq1 Length=5014741 Score = 129 bits (142), Expect = 1e-24 Identities = 285/416 (69%), Gaps = 10/416 (2%) Strand=Plus/Minus Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144 |||| ||||||||||| | || |||||| | || || | || ||| |||||||| | Sbjct 3459060 ACGACGGGCGTGATGAATTCCTGGAAGAACTCAGGGATGGCCAGCAGAG-AGGGAAACTG 3459002 Query 298145 --CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGG 298202 || | |||||||| |||| ||||| || ||| | ||||| |||| |||| Sbjct 3459001 GACT-TCCAAAAAGTTGATGAGAAGACCCTTGATATGACTACCGTCGTGATCCTGATCGG 3458943 Query 298203 TCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCG-GTT 298261 ||||||||||| |||||| || || || ||||| ||||||| | | | | Sbjct 3458942 CCATGATCATCAAATGACCATACCGCAGGCTCTTGGTGTCGGTGTACACCTGTTTGTGCT 3458883 Query 298262 TGAAGGCCGAGAATTTGTTTGA-GCGCTGTGATTTCTTCGTTCTTCGTGATGCTTG-CCA 298319 | ||| || | || | | |||| | ||| ||| || | |||||||||||| || | | | Sbjct 3458882 TCAAGCCCAAAAACT-GCTTGATGTTCTG-GATCTCCTTGTTCTTCGTGAT-CTGGTCGA 3458826 Query 298320 CGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGC 298379 ||| |||||||| |||||||| ||||| ||||| || |||||||| ||| | ||| Sbjct 3458825 TGGAGGCATCGCGCACATTCAAAAGTTTACCACGCAGCGGGAACACACCAATGCGGTCGG 3458766 Query 298380 GACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAA 298439 | ||| ||||| | || || | || || ||||| || ||||||||||| | Sbjct 3458765 GGTCGAGCACGGCACGGCCAGCAACAGCCAGACCACGGGCGGAGTCACCCTCCGTCAGGA 3458706 Query 298440 TGAGAGTGCACATTTTGCTGTTATTCGTTCCAGCCCATGTAGCATCGTTGAGTTTG 298495 | || |||||| | || || || || || ||| | | |||||| ||| ||| Sbjct 3458705 TCAGCGTGCACTCGTGGCCGTGCTTGGTACCTGCCAAGTTGGCATCGACGAGCTTG 3458650 Score = 93.3 bits (102), Expect = 9e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| | ||||||||| | |||||| |||||||| || ||||| |||||||| | Sbjct 1638687 CTTCTGGGCATGAACGCCACCCTCATGAAGCAGTACATTGAGTTCGTTGCCGACCGTCTG 1638746 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | |||| || || | || || || ||| ||||| || ||||||| |||||||||| Sbjct 1638747 CTGGTCGCTCTCGGCAACGACAAGGTCTACCGCTCCACCAATCCCTTTGACTTTATGGAG 1638806 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA-ACG 243740 ||| || || || || || ||||||||||| ||||| ||| | || || || | | Sbjct 1638807 AACATCTCCCTGGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTACCAGAAG 1638866 Query 243741 CCCTGGTGTGATG 243753 || ||||| ||| Sbjct 1638867 GCC-GGTGTCATG 1638878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879632603100