Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq2 105 7e-18
>seq2
Length=4288194
Score = 105 bits (116), Expect = 7e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | || ||||| || || |||||||| || | || |||||| ||||
Sbjct 328432 AAGGACCAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTC 328373
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
|| ||||||||||| || | || || |||||||||||||| ||||| || || || ||
Sbjct 328372 CTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTC 328313
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| || || | ||||| | || || || | || | |||
Sbjct 328312 CTGGATCTTGGACTTGACGTTGTCAATGGTATCCGAAGACTCGACCTCAAGCGTGATGGT 328253
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||||||| | || || |||||||| |||||
Sbjct 328252 CTTGCCGGTGAGCGTCTTGACGAAAATCTGCAT 328220
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | ||||| || || || |||||||| || | | || || |||||
Sbjct 329343 AGCACCAGGTGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTCCGGCCGTCT 329284
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||||||||| ||| |||| || ||||||||||| || ||||| || || || ||
Sbjct 329283 TCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCC 329224
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || || | || || || |||||||| | || | |||
Sbjct 329223 TGGATCTTCGACTTGACGTTGTCAATGGTGTCCGAGGATTCCACTTCCAGCGTAATCGTC 329164
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || |||||||| |||||
Sbjct 329163 TTGCCCGTCAGGGTCTTGACGAAAATCTGCAT 329132
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || || | ||| || || || || |||||||| || | || |||||| | ||
Sbjct 328659 AGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 328600
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || || ||||||||||| || ||||| || || || ||
Sbjct 328599 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGAATGCCCTCCTTGTCC 328540
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || || | || || || | ||| | ||||
Sbjct 328539 TGAATCTTGCTCTTGACATTGTCGATCGTGTCGGACGACTCGACCTCGAGAGTGATGGTC 328480
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|||||||| | || || ||||| || |||||
Sbjct 328479 TTGCCGGTAAGCGTCTTGACGAAGATCTGCAT 328448
Score = 98.7 bits (108), Expect = 1e-15
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||||| | || | |||||| || || ||||||||||| || |
Sbjct 329131 ACCACCACGCAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGGA 329072
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || ||||||| | ||||||||| ||| |||| || ||||||||||| || ||
Sbjct 329071 CAGCGTCCGGCCGTCTTCCAACTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCTGGCGG 329012
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCC 64393
|| || || || ||||| || || ||| || || | || | ||| || ||
Sbjct 329011 GATGCCCTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCAATCGTGT--CCGACGACTCA 328954
Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || | || | |||||||| ||||| || || || || ||||||||
Sbjct 328953 ACCTCCAACGTAATCGTCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328904
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/214 (70%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || || | ||| || || || || |||||||| || | || |||||| | ||
Sbjct 328887 AGAACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCATCC 328828
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || || ||||||||||| || || || || || || |||
Sbjct 328827 TCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCT 328768
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGG 64409
|| || || ||| || || | || | ||| || || || || | || | |
Sbjct 328767 TGGATCTTGCTCTTGACGTTGTCAATCGTGT--CCGACGACTCAACCTCCAACGTAATCG 328710
Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||||| ||||| || || || || ||||||||
Sbjct 328709 TCTTGCCCGTCAAGGTCTTGACAAAGATTTGCAT 328676
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644637615440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |