Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08]
26 sequences; 25,862,907 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq2 408 4e-109
>seq2
Length=4288194
Score = 408 bits (452), Expect = 4e-109
Identities = 1105/1669 (66%), Gaps = 34/1669 (2%)
Strand=Plus/Plus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | ||||||| |||||| || |||||| || |||||||||||| | || ||
Sbjct 3315853 AACTACCAATACTTTGGCTTCAAGACCCTGGAGCGCTCCTACCTCCTCAAGCTCGACGGT 3315912
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| | || |||||| ||||| || || | ||||| || ||| | || || || ||
Sbjct 3315913 AAGATTGTCGAGCGGCCGCAGCACATGATCATGCGTGTGGCCGTTGGTATCTGGGGTGAC 3315972
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
|| || | ||| | | | | || ||||| ||||| | || |||
Sbjct 3315973 GATGTGGAGCGCGTTGTCGAGACATACAACTACATGTCCAACAAGTTCTTCACACACGCC 3316032
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954
| ||||| || |||||||| || || || | | ||| ||||||| || ||||| ||
Sbjct 3316033 TCGCCGACGCTCTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCTTCCTGCTTCCTCGTG 3316092
Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014
| |||| |||| ||| || || | ||||| |||||| ||||| | |||
Sbjct 3316093 GACATGAAGGACGACAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATC 3316152
Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074
|| || || || || ||||| | | ||||||| | | || |||| || ||||||
Sbjct 3316153 TCCAAGACGGCCGGTGGCATCGGTCTGAATGTCCACCGCATTCGCGCCACCGGCTCCTAC 3316212
Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134
|| ||| ||||| ||||| ||||||||| || |||||||||| || ||||| ||||||
Sbjct 3316213 ATTGCCGGCACCAACGGCACATCCAACGGCATCATCCCTATGCTTCGTGTCTTTAACAAC 3316272
Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194
|||| |||||||||||||||||||| | | | ||| | ||| |||| |
Sbjct 3316273 ACGGCCCGCTACGTGGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTCTGCATCTACTTG 3316332
Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254
||||| |||||||| || || | ||| | |||||||| |||||||| || || ||
Sbjct 3316333 GAGCCGTGGCACGCCGATGTCTTTGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAG 3316392
Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314
|| | ||| | || || ||| |||||||||| | || || || || ||||| ||
Sbjct 3316393 GAGGTCCGTGCCCGTGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGT 3316452
Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374
|| |||| ||| || |||| || | || |||||||| || |||| ||| | ||
Sbjct 3316453 GTGGAGACCAACGGCGAGTGGACGCTGATGTGCCCCAATGAGTGCGCCGGCCTGGCGGAT 3316512
Query 94375 GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGGGCAAGGCC-- 94431
| || | ||||| | |||| | ||||| | || || | || |
Sbjct 3316513 TGCTACGGCGAGGAGTTTGAGGCGCTGTACGAGAAGTACGAGAGCGAGGGCCGTGGTCGT 3316572
Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491
| |||||| | | || |||||||||| | || |||| | ||| |||||||
Sbjct 3316573 AAGAAGGTCA---AGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACG 3316629
Query 94492 GGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550
|| | || | ||| | | |||||| | ||| |||| |||| ||||||| || ||||
Sbjct 3316630 GGCAACCCGTTCATGCTCTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAGAACCT 3316688
Query 94551 CGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610
|| ||| |||||||| |||||||| |||||||| ||||| | | ||||||||
Sbjct 3316689 GGGCACCATCCGCAGCTCGAACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGA 3316748
Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670
| | || ||||| ||| ||| ||| | || | | ||||| ||| ||| |
Sbjct 3316749 GGTGGCCGTGTGCAACTTGGCCTCGCTGGCTCTTCCGTCGTTCGT-CGA-----CTATA- 3316801
Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAA 94730
| || | |||| || | || ||| || || || | | ||| ||
Sbjct 3316802 -ACAAC-GAGTCGTATGACTTCCAGCGGCTGCACGACGTCACGCAGTTGGTTGTCCGCAA 3316859
Query 94731 CCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCT 94790
||| ||| | | || ||| ||||| ||||||||| || ||||| ||| ||| |
Sbjct 3316860 CCTCAACCGCATCATTGACGTGAACTACTACCCCGTGCCCGAGGCACGAAACAGCAACAT 3316919
Query 94791 GAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCG 94850
| || |||||||| || | || || |||||| | || ||||| | || | ||||
Sbjct 3316920 GCGCCACCGGCCCATTGGTCTGGGTGTGCAGGGTCTGGCAGACGCCTTCCTGGCGCTGCG 3316979
Query 94851 TCTGCCCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909
|||||| || || ||| || || | |||| | | || ||||| | ||| |
Sbjct 3316980 CATGCCCTTTGAGTCGCCCGAGGCACGCCTG-CTGAACAAGCAGATCTTCGAGACCATCT 3317038
Query 94910 ATTACGGGGCCATGAAACAATCCGTCCAC-TTGGCC-AGATCGGACGGCGGGCCACACGA 94967
| ||| ||| ||| | | ||| | | ||||| |||| || || | || |
Sbjct 3317039 ACCACGCGGCGCTGACGGAGT-CGTGCGCGCTGGCCAAGAT----CGAGGGTACCTACCA 3317093
Query 94968 ATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027
| | | || || || || ||||||||| | ||| |||| | |||| ||||
Sbjct 3317094 AACATATGAGGGCTCTCCTGTGTCGCAGGGCATTCTGCAGCCCGACATGTGGGACGTGAC 3317153
Query 95028 GCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCA---AACACGGTGT 95084
|||||||| |||| |||||||| | || || ||||| | |||| | ||||||||
Sbjct 3317154 GCCCTCGGACCTGTGGGACTGGGACTCGCTGCG-GCTGAAG--ATCAAGGAGCACGGTGT 3317210
Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144
| ||| ||||| ||||| || ||||| ||||| || ||| ||||||| || |||||
Sbjct 3317211 GCGCAACAGTCTGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCGCAGATTCTGGGCAA 3317270
Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204
|||||||| ||||| || | ||| |||||| | ||| |||| ||||| ||||| ||
Sbjct 3317271 CAACGAGTGCTTCGAGCCATACACGTCCAACATCTACTCGCGGCGTGTGCTGGCCGGCGA 3317330
Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTG 95263
|||| || ||||| | || || |||||| | || | ||||| ||||| |
Sbjct 3317331 GTTCCAGGTGGTCAACCCGTGGCTGCTCAAGGACCTGGTCGAC-ATGGGTCTGTGGTCGG 3317389
Query 95264 ACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATAC 95323
|||| | ||||||| | | | ||||| || |||||||||| || | || |
Sbjct 3317390 ACAACATGAAGAACCGCATCATTGCGGAGAACGGTTCGATCCAGAACATTCCCAACATCC 3317449
Query 95324 CGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
||| ||||||||||| || |||||||| |||||||||||| |||||||
Sbjct 3317450 CGGCCGACATCAAGGCCCTGTACAAGACGGTGTGGGAGATCTCGCAGCG 3317498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494723039214960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |