Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Raffaelea_20quercivora_20[genbank_20GCA_5F001662465.1_202016-06-08] 26 sequences; 25,862,907 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2 408 4e-109 >seq2 Length=4288194 Score = 408 bits (452), Expect = 4e-109 Identities = 1105/1669 (66%), Gaps = 34/1669 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| || |||||| || |||||||||||| | || || Sbjct 3315853 AACTACCAATACTTTGGCTTCAAGACCCTGGAGCGCTCCTACCTCCTCAAGCTCGACGGT 3315912 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | | || |||||| ||||| || || | ||||| || ||| | || || || || Sbjct 3315913 AAGATTGTCGAGCGGCCGCAGCACATGATCATGCGTGTGGCCGTTGGTATCTGGGGTGAC 3315972 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 || || | ||| | | | | || ||||| ||||| | || ||| Sbjct 3315973 GATGTGGAGCGCGTTGTCGAGACATACAACTACATGTCCAACAAGTTCTTCACACACGCC 3316032 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 | ||||| || |||||||| || || || | | ||| ||||||| || ||||| || Sbjct 3316033 TCGCCGACGCTCTTCAACGCCGGCACGCCCCAGGCTCAGCTGTCTTCCTGCTTCCTCGTG 3316092 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 | |||| |||| ||| || || | ||||| |||||| ||||| | ||| Sbjct 3316093 GACATGAAGGACGACAGCATTGAGGGCATCTACGACACGCTCAAGACGTGTGCCATGATC 3316152 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || || || || || ||||| | | ||||||| | | || |||| || |||||| Sbjct 3316153 TCCAAGACGGCCGGTGGCATCGGTCTGAATGTCCACCGCATTCGCGCCACCGGCTCCTAC 3316212 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 || ||| ||||| ||||| ||||||||| || |||||||||| || ||||| |||||| Sbjct 3316213 ATTGCCGGCACCAACGGCACATCCAACGGCATCATCCCTATGCTTCGTGTCTTTAACAAC 3316272 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 |||| |||||||||||||||||||| | | | ||| | ||| |||| | Sbjct 3316273 ACGGCCCGCTACGTGGACCAGGGTGGCAACAAGCGCCCCGGTGCCTTCTGCATCTACTTG 3316332 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| |||||||| || || | ||| | |||||||| |||||||| || || || Sbjct 3316333 GAGCCGTGGCACGCCGATGTCTTTGAGTTCCTGGACCTGCGGAAGAACCAGGGTAAGGAG 3316392 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 || | ||| | || || ||| |||||||||| | || || || || ||||| || Sbjct 3316393 GAGGTCCGTGCCCGTGATCTTTTCCTCGCTCTCTGGATCCCCGATCTGTTCATGAAGCGT 3316452 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 || |||| ||| || |||| || | || |||||||| || |||| ||| | || Sbjct 3316453 GTGGAGACCAACGGCGAGTGGACGCTGATGTGCCCCAATGAGTGCGCCGGCCTGGCGGAT 3316512 Query 94375 GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGA-ATCGCAGGGCAAGGCC-- 94431 | || | ||||| | |||| | ||||| | || || | || | Sbjct 3316513 TGCTACGGCGAGGAGTTTGAGGCGCTGTACGAGAAGTACGAGAGCGAGGGCCGTGGTCGT 3316572 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | |||||| | | || |||||||||| | || |||| | ||| ||||||| Sbjct 3316573 AAGAAGGTCA---AGGCCCAGAAGCTGTGGTACGCCATTCTGGAGGCGCAGACGGAGACG 3316629 Query 94492 GGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCT 94550 || | || | ||| | | |||||| | ||| |||| |||| ||||||| || |||| Sbjct 3316630 GGCAACCCGTTCATGCTCTACAAGGACCACTG-CAACCGCAAGAGCAACCAGAAGAACCT 3316688 Query 94551 CGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGA 94610 || ||| |||||||| |||||||| |||||||| ||||| | | |||||||| Sbjct 3316689 GGGCACCATCCGCAGCTCGAACCTGTGCACGGAGATTGTGGAGTACTCGGCGCCGGACGA 3316748 Query 94611 GATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACAC 94670 | | || ||||| ||| ||| ||| | || | | ||||| ||| ||| | Sbjct 3316749 GGTGGCCGTGTGCAACTTGGCCTCGCTGGCTCTTCCGTCGTTCGT-CGA-----CTATA- 3316801 Query 94671 GTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAA 94730 | || | |||| || | || ||| || || || | | ||| || Sbjct 3316802 -ACAAC-GAGTCGTATGACTTCCAGCGGCTGCACGACGTCACGCAGTTGGTTGTCCGCAA 3316859 Query 94731 CCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCT 94790 ||| ||| | | || ||| ||||| ||||||||| || ||||| ||| ||| | Sbjct 3316860 CCTCAACCGCATCATTGACGTGAACTACTACCCCGTGCCCGAGGCACGAAACAGCAACAT 3316919 Query 94791 GAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCG 94850 | || |||||||| || | || || |||||| | || ||||| | || | |||| Sbjct 3316920 GCGCCACCGGCCCATTGGTCTGGGTGTGCAGGGTCTGGCAGACGCCTTCCTGGCGCTGCG 3316979 Query 94851 TCTGCCCTACGACTCTGTCGACGC-GGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909 |||||| || || ||| || || | |||| | | || ||||| | ||| | Sbjct 3316980 CATGCCCTTTGAGTCGCCCGAGGCACGCCTG-CTGAACAAGCAGATCTTCGAGACCATCT 3317038 Query 94910 ATTACGGGGCCATGAAACAATCCGTCCAC-TTGGCC-AGATCGGACGGCGGGCCACACGA 94967 | ||| ||| ||| | | ||| | | ||||| |||| || || | || | Sbjct 3317039 ACCACGCGGCGCTGACGGAGT-CGTGCGCGCTGGCCAAGAT----CGAGGGTACCTACCA 3317093 Query 94968 ATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAA 95027 | | | || || || || ||||||||| | ||| |||| | |||| |||| Sbjct 3317094 AACATATGAGGGCTCTCCTGTGTCGCAGGGCATTCTGCAGCCCGACATGTGGGACGTGAC 3317153 Query 95028 GCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCA---AACACGGTGT 95084 |||||||| |||| |||||||| | || || ||||| | |||| | |||||||| Sbjct 3317154 GCCCTCGGACCTGTGGGACTGGGACTCGCTGCG-GCTGAAG--ATCAAGGAGCACGGTGT 3317210 Query 95085 GAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAA 95144 | ||| ||||| ||||| || ||||| ||||| || ||| ||||||| || ||||| Sbjct 3317211 GCGCAACAGTCTGCTGGTGGCGCCGATGCCGACGGCGTCGACGTCGCAGATTCTGGGCAA 3317270 Query 95145 CAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGA 95204 |||||||| ||||| || | ||| |||||| | ||| |||| ||||| ||||| || Sbjct 3317271 CAACGAGTGCTTCGAGCCATACACGTCCAACATCTACTCGCGGCGTGTGCTGGCCGGCGA 3317330 Query 95205 ATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTG 95263 |||| || ||||| | || || |||||| | || | ||||| ||||| | Sbjct 3317331 GTTCCAGGTGGTCAACCCGTGGCTGCTCAAGGACCTGGTCGAC-ATGGGTCTGTGGTCGG 3317389 Query 95264 ACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATAC 95323 |||| | ||||||| | | | ||||| || |||||||||| || | || | Sbjct 3317390 ACAACATGAAGAACCGCATCATTGCGGAGAACGGTTCGATCCAGAACATTCCCAACATCC 3317449 Query 95324 CGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372 ||| ||||||||||| || |||||||| |||||||||||| ||||||| Sbjct 3317450 CGGCCGACATCAAGGCCCTGTACAAGACGGTGTGGGAGATCTCGCAGCG 3317498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723039214960